FMO03156.5prime Sequence
1217 bp (1063 high quality bases) assembled on 2008-07-07
> FMO03156.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGACCAATCTCTGGAAG
GCATTGACGCGTCGCAAGACGGAGGACGTGAACGAAGGCGAGTCCCAGTT
GGCGCGAGTGCTGAACCTTTTCGATCTGACGGCTTTGGGAGTGGGCAGTA
CTTTGGGACTGGGAGTCTATGTGCTGGCTGGTCAGGTGGCCTTCAATATT
GCCGGGCCAGCGGTGACCATTTCCTTCCTGATTGCGGCCATCGCGTCTGC
CTTCGCGGGGATCTGCTATGCGGAGTTCGCCGCGCGAGTGCCCAAGGCGG
GAAGCGCCTACGTATACAGCTACGTGACCATTGGAGAGTTCGTCGCCTTC
ACCATAGGATGGAATCTCATTCTGGAGTATGTGATTGGCACAGCCTCAGT
TGCGCGCGGCCTGAGCGGATATTTCGACTCTCTGATCAACAACAACATGT
CGAAGGCATTGAATGAGTCGATGCACATCGACGTCGACTTTCTGGGTGAC
TACCCCGATTTTTTGTCCTTCGGCATGGTGCTGCTCCTGGCGGCCATCCT
CGCCTTTGGCGCCAAAGAGTCAAGCTTCCTGAACAACATCTTCACCACAG
TCAATCTGGTTACGATCGCTATCGTCCTGGTGGCTGGCGCCATGAACGCC
AACGTCGACAATTGGCGCATCCCGAAGAAAGATGTTCCCGAGGGCTTTGG
CACGGGAGGCTTCATGCCGTTCGGCATTGCTGGAGTGATGGCCGGAGCTG
CCAAATGCTTCTACGGCTTCGTGGGGTTCGACTGCATCGCCACCACGGGC
GAGGAGGCCATCAACCCAAAGCGCAACATTCCGCTCTCTATCGTGGTGTC
GCTGATCATAATCTTCCTATCCTACTTTGGAGTGTCCACGGTGCTGACTA
TGATGCTGCCCTACTACAAACAGGACAAGGATGCACCTTTTCCTCACGCT
TTCGATTCCGTCGAGTGTACACCATCAAGTGATTGTGACATAGTGCTGTG
TTTGCGCTCTGCACTAGTTTGTGGGCGCATGTCCACTGCTCGCATCCTCT
ACGCCATGGGCAAGACGCATATGTCAAGAGGCTGTCACATGACAGCTACC
GAGACCCGCTCCTGCACATTTGGTCTGAATCTTGCTTCATATGGCCATGT
CTTTACCTGACAGCTTGGGACATGATGTTCATCGACGGTTAACTTACCCC
ATCTCGTGTCAAGTGTG
FMO03156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 2523 | CG11128-RB | 135..1318 | 32..1184 | 5105 | 97 | Plus |
| slif-RC | 2653 | CG11128-RC | 265..1448 | 32..1184 | 5105 | 97 | Plus |
| slif-RA | 2744 | CG11128-RA | 356..1539 | 32..1184 | 5105 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22891366..22892407 | 32..1064 | 4795 | 99.1 | Plus |
| 3L | 28110227 | 3L | 17853690..17853847 | 913..756 | 310 | 79.7 | Minus |
| 3L | 28110227 | 3L | 17854354..17854503 | 373..224 | 270 | 78.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:22 has no hits.
FMO03156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:03 Download gff for
FMO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RB | 135..1228 | 32..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:58 Download gff for
FMO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 354..1449 | 28..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:29 Download gff for
FMO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 354..1449 | 28..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:29 Download gff for
FMO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22891358..22892459 | 21..1107 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:58 Download gff for
FMO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22884458..22885559 | 21..1107 | 97 | | Plus |
