FMO03157.5prime Sequence
1219 bp (1063 high quality bases) assembled on 2008-07-07
> FMO03157.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGAAGGAGTGTCCTTA
TGGCGAAAAGTGCTACAGGAAGAATCCCATTCATTTTGGCGAGTTCTCCC
ATGCCCACCTTGATGCCATTTATGCGAAGGGAAATGAATCGGGGGACTAT
GAGATACCAGCCAATTACTCCAGCGAGATGATTCACACCCAGTTGAAGCT
GCTGGAGAAACTGTTTCCCAAGCAGGCAACCAACAAGGAACAGGAAGCAC
ATTCCTCTAGCTCAAAACCAGCCGTAACTGCTCCGGTTGCCAGTGGATCC
TCGAGTTCTGGGTCCCTAGATACCAATCCCAGTGGATCGTCAGCCTCCGG
GCCAGCTGCTTCCCAAGACACCTCAAATCTGGCCAAAAAACAGAAGCTAA
ATGCCAAGAACATCAGAGATTATATTCCTGTGGTAATCGAAAAGGGAGGA
ATGGCCAAAAAGCTGGAGCGGGCAGCTCCCTATAACATGTTCCTCACCGC
GATCACGGACTCCAAGCCCACCCACTCGGAGCCATTGAGCATAACGCTGC
AGGAAATCCTGGACGAAAGTCTCGGCGAGATTGAGAGCACCGTCCAAATT
AACTTTATGGTGGACATTGGCTGGCTCCTGGGACACTACTACTTTGCCGG
GATACTGGACAAGCCACTTTTGCTGCTCTACGGCGACGAATCGCCGGAGC
TGCTTAGCATTGGGAAGTTCAAGCAGCAGGTCACGGCCATTCGTGTCAAG
ATGCCCACGCCGTTTGCCACCTCGCACACCAAGATGATGTTCCTCGGCTA
CAGCGATGGCTCCATGCGGGTGGTCATATCCACGGCGAATCTGTACGAGG
ACGACTGGCACAATCGCACGCAGGGCCTGTGGAATCAGTCCCAAGCTGCC
TGCTCTGCCGGTCGATGCGGATACGGGCGCTGGCGAAAGTCTGACGGGCT
TCAAACAGGATCTGATGCTGTACTTGGTGGAGTACAGATAGGCCAGCTGC
AGCCTTGGATAACCAGGGATTCGGACAGTGATTCAGTGCCATCAACGTTT
TTCTTCCTGGGCTCTGTGCCCGGAGGTCATCGCGAAGGCAGCGTGCTGTC
ATCCATGGGGCCCCGCCCGCTTGGCCTCTGCTCGCAAAAGCGGGCCAATC
GCAGATGCATACGTCGCTGGCCTAGCTCGAGCACTGCCAGCTTGGGGAGC
CCACGGTGCAGGGTCGTGG
FMO03157.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gkt-RA | 2221 | CG8825-RA | 122..1312 | 32..1212 | 5250 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3160203..3160750 | 110..657 | 2740 | 100 | Plus |
| 2L | 23513712 | 2L | 3160810..3161199 | 657..1045 | 1685 | 97.2 | Plus |
| 2L | 23513712 | 2L | 3160071..3160148 | 32..109 | 390 | 100 | Plus |
| 2L | 23513712 | 2L | 3161257..3161338 | 1049..1128 | 285 | 92.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:46 has no hits.
FMO03157.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:13 Download gff for
FMO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gkt-RA | 110..1227 | 24..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:49 Download gff for
FMO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gkt-RA | 116..1233 | 24..1139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:41 Download gff for
FMO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gkt-RA | 116..1233 | 24..1139 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:41 Download gff for
FMO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3160065..3160148 | 24..109 | 96 | -> | Plus |
| 2L | 3160203..3160749 | 110..656 | 100 | -> | Plus |
| 2L | 3160810..3161199 | 657..1045 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:49 Download gff for
FMO03157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3160065..3160148 | 24..109 | 96 | -> | Plus |
| arm_2L | 3160203..3160749 | 110..656 | 100 | -> | Plus |
| arm_2L | 3160810..3161199 | 657..1045 | 97 | -> | Plus |
