FMO03158.5prime Sequence
1224 bp (1030 high quality bases) assembled on 2008-07-07
> FMO03158.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTAGTGACTGG
GACGAGATCAAGCGCTTGGCCGCCGACTTTCAGAAGGCGCAGCTCACGTC
TACGCTGCAGAAGCTCTCGGAGCGAAACTGCGTGGAGATCGTCACGCTGC
TGCTGGAGAAGCAGATGCTGGAGGTGGTGTTCACCAACGATGGCAAGGAG
TACATCACGCCGGATCATCTGGAGCGCGAGATCCAGGACGAGTTGTACGT
GAACGGAGGTCGTGCCAACTTGGTGGAGGTCAGCAAAACCCTAAATGTGG
ATTTATCACGAATCGAGCTGCTTGCCGAACGAATATCTGCGGAGAATCAA
AGCGTACACCTGGTACTGGGACAGCTAATCGACGAGGACTACATCAGTCA
TATTGCGCAGGAGATCAACGAGAAGCTGGTTCAGCGAGGAGAGGTTTCCA
TTTCGGAATTGGCTTCCCAGTTCGATCTGCCGTCGGACTTCCTGCAACAC
GACGTGGTCGAAAAGCATCTAGGTAAGATTATTAAGGGTCGCCAGGATGC
CTCAAATCCGCGGGTGTTCTTCACTCAGGCCTACATCCAACGTTGCAAAG
CGAAGATTCGGGGAGCCCTGGCCGCCATTACCAGGCCCATAAATGTGGCT
GTGATTCTTCAGAAGATCGGTGTGCAGGAGAAGATCTTCTACTCGTTGCT
GGACGAAATCGCGCCAGCTGGCCAGGTTACCTCCAAGCAGGCCAACTCCC
AATACGTGCCGCACATCTATGCCAAGACGCAGGCTGACTGGGTGAACTCG
TTCTACAAGCAGAACAGCTTCCTTGAGTATGATGCCATTCAAAAGCTGGG
AATTTCGGATGCCCAGTCCTACATTCGCAAGCAGTTCCCCAACGAAGAGT
TTCTCTACCTCAAGCGTGTGGCCCTTGGCGCTCGACTGGTTGAGCTCACG
GTGGTCACGGCGCTAATGAGTGCAGTGCCACCAGCAGTACCTGGATCTTG
ACACATACTTCATCGAATCTGTCGAGGAGGATATCGAGGAGGTTTCAGCA
CATCATGTCCAAAAGCAAGCCATCCCAGCAACTTTGTTTATCTTGAATGC
ATTGAATTTCGCACAATACCTCCGCGCAATGATCAGCGGTTCAGGCGGTG
CCAAGTCTCAGCAAGCGGCACTCGATGGCGCTTATCAACGATCACATTGT
GGGAAAGAAACGCCTAGCGCCCCA
FMO03158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-RC | 2482 | CG1104-RC | 36..1197 | 36..1180 | 5090 | 96.9 | Plus |
| CG1104-RA | 2574 | CG1104-RA | 128..1289 | 36..1180 | 5090 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7073182..7074182 | 1104..113 | 4420 | 98.2 | Minus |
| 3R | 32079331 | 3R | 7074248..7074325 | 113..36 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:38:36 has no hits.
FMO03158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:50 Download gff for
FMO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 126..1213 | 36..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:27 Download gff for
FMO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..1215 | 36..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:01 Download gff for
FMO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..1215 | 36..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:01 Download gff for
FMO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7073190..7074182 | 113..1096 | 98 | <- | Minus |
| 3R | 7074249..7074325 | 36..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:27 Download gff for
FMO03158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2898912..2899904 | 113..1096 | 98 | <- | Minus |
| arm_3R | 2899971..2900047 | 36..112 | 100 | | Minus |
