FMO03159.5prime Sequence
1225 bp (998 high quality bases) assembled on 2008-07-07
> FMO03159.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTAAATCTCCTA
CGAAGGCGCCCAACGTCGGTGCCCCTCATCCGGGCCGCGCTTAGCGCTCC
GCTGCACTCAACGGAAAACCGGCCGGGTTACATAGTGCTGGTACCGGAGA
TCGGTGAGGAGGGACCGCTAGGCGAGGGCGTGCTCAAGCCGGACGGACTT
CCCGCCTTCAGTGACATCACCATCGAGATGTGCTTGGGCGCCATTGGTCA
GCAGGCATCGGCGGTGGAGAACTCGGTGAAGGCGCTGGAGAGCGACCTGC
ACAGTGGCAAGCAGCTAAATGCCGCCAGCATCTTTCGGGAGCTGGACACC
GTGACGGGTCCACTGGAGACGACATGGGGTGTGGCCAAGGCTCTGTACCT
GGGCAATTCTACCCTGATACCCACCAAATCCTACATGAACATCCACGAAC
GAGCGCGTAACGCTCGGGCAGCGAAGTTCTGCAATCAAACGGTGTATAAG
GCACTCAAGGATGCTTCGTCCGATTCGGGTCCAGATGAGCAGAGGATGCG
ACAGAAGTTCCTGCTCGAGGGCAAGCTGAACGGGCTCACGCTGGACAAAG
ATAAGCAGGATGGACTGAAAGAGCTGCTTACCCATTTGGGTCGAGAGAGA
GCCAACTTCAAGAACAAGGTCAACATGGCAGTGCACTCGTTTGGACAGAT
TATTACGGACTTCAATCTTGTAAGAGATTTCCCGCCTTCGCTTCTTGAGG
CAACAGCCCGCGATCCCGGACAACCTATGACGGGTCCTTGGAAGATAACC
CTACAGCCTCAAGTGGTCGATGGTTTTCTAAAGCACTGCCCAGAGCGAAT
GCAGCGTTGGAACGTCTGGAGGGCCAGTGTGCTGAACGCATCCTCGCAGC
AGGAAAATCCCTGGAGAACAGCACACACATCGAAAAAAATACGCGGATTG
CGCAAGCGACAGGCAAATCTGTTCGCGCTATGAAAGCTTTGCAGACATGT
CCATGCAAACCAAATGGTGGGCAGTGTGACAACTTAAGCAGATCTTGCCA
GGCTTCTCAGTTCGCCGACCTGCTCAAGTGTGGAGCTGGAAAACTACAGA
CTACCGTCAGACAAGTGCTGGTAATCAGCTGAAGCTCACGACGTTGCTTA
TTGGCCGGCAGGCACTGGCGGCGATTAGGGCTTCAGAATCCAAAGCTTCG
GCGAGATTGTCCACAGGTGACCCGC
FMO03159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11771-RA | 2853 | CG11771-RA | 121..1275 | 33..1173 | 5020 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24932294..24933250 | 140..1090 | 4205 | 98.3 | Plus |
| 3R | 32079331 | 3R | 24932130..24932237 | 33..140 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:15 has no hits.
FMO03159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:31 Download gff for
FMO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 112..1187 | 29..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:10 Download gff for
FMO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 119..1194 | 29..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:11 Download gff for
FMO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11771-RA | 119..1194 | 29..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:11 Download gff for
FMO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24932128..24932236 | 29..139 | 98 | -> | Plus |
| 3R | 24932294..24933260 | 140..1099 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:10 Download gff for
FMO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20757850..20757958 | 29..139 | 98 | -> | Plus |
| arm_3R | 20758016..20758982 | 140..1099 | 98 | | Plus |
