FMO03160.5prime Sequence
1229 bp (1036 high quality bases) assembled on 2008-07-07
> FMO03160.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGGAATCCGAATCC
TCGCAGGATGATTGGTCCGCATTCGATCCAATGTCCAGGGAATACTATGA
CCAAGTGGGCAACCGTTACACTAACGAGTCTGGCCAGAAACTAATCATGG
AAGCCCCGCTGCCGCCAAAGGACGAAAAGGAGCAACGTGCCACCAGGCAG
GCGAAGTATCCATACTTGGTGGTTCCAAAAAGCAGTCCCTATGTGACCGA
AAAGATGCTAATCAACTTCTTCGGTCGGGCGCTCATCAAGGAGATGGAGT
TCCGCCGCTTGTCACGCGTATACTTTGTCTACTTTGAAAATATCGCATCC
CTGGAGACAGCGCAACAGCGGGTGCAGCGTTACCCGAACCTGATCAAGTG
CATCACTGGTCGCCCGCAAAAGGAGCGGGAAATCACCAGCGATCCGGTGA
CTTCCACTGAGCCAATGCCAACACCAGGCCCAGCAATTTCGGCCACTGAA
CGTACGCCAGTGAATCACAACAGAGAGGTTCCGATCTCGACCGGAGGACA
AAATCATCCGGAGTTCTTCCGGCCACCGCTGGTCACCAAAGATGATTACA
AAAGAGGTTCATTGTTGGCCACCAACGACCCCATTCAACGCTATCTCAAT
GTAAAGTACGAATTCGCACTGGAGCGCCATGATATCTACAAGCTTAAGGA
TGAGACCAGAATCCCGCAGGTCGTTCTGCACTTTCGTTCGGGCAGAACGA
TTCCTTTGTCAACGGTTGCTGTCACCGAAGAGGATAAAACTAAAAGCCTG
CTGGAAGACGGCGTCAGCAAGTGCGTGGTTTGTCAAAACTGGACAGACAC
TTTCTGCAAGCTGTGCAAATGCCCTTCTGCAATGCCTCCTGTTTCGCGAT
GTGGCAGAGCAGCATAAGCAAGCTTGCGGCAAGGGTGAGATACTTTACCT
TGACGAAAGGTGGGCCGGAGGTACCCCAAACCCGGCTTGCGCCGTCTGGA
TCTAAAGTGAGAATTACTGCATTCGAGCAGACTAACGTGTCTATGTGCCG
CTCGGCGGAAATTCGAATGACATCGCTATTTATCAGTTCCTCCCGAGTAT
GATGCCTGGCCAAGATGCTTCGAACTGCCAGTACGCAGTCTGGCGACATT
GTGCCTCCCAAGTTCAGGACATGTTCCGCGCCCATGGGTCTAACGGTGAT
AATATCCAAGGAAATCTTAATGTGTACTG
FMO03160.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vret-RA | 2328 | CG4771-RA | 58..1255 | 36..1217 | 5060 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22744738..22745150 | 759..347 | 2065 | 100 | Minus |
| 3R | 32079331 | 3R | 22745214..22745524 | 346..36 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 22744364..22744674 | 1064..758 | 1215 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:31 has no hits.
FMO03160.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:33 Download gff for
FMO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4771-RA | 40..1113 | 27..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:48 Download gff for
FMO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 40..1113 | 27..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:35 Download gff for
FMO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vret-RA | 49..1122 | 27..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:35 Download gff for
FMO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22744389..22744674 | 758..1039 | 97 | <- | Minus |
| 3R | 22744740..22745150 | 347..757 | 100 | <- | Minus |
| 3R | 22745214..22745533 | 27..346 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:48 Download gff for
FMO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18570111..18570396 | 758..1039 | 97 | <- | Minus |
| arm_3R | 18570462..18570872 | 347..757 | 100 | <- | Minus |
| arm_3R | 18570936..18571255 | 27..346 | 98 | | Minus |
