FMO03162.5prime Sequence
1254 bp (1044 high quality bases) assembled on 2008-07-07
> FMO03162.5prime
TCGTATAGCATAAAAATACGAAGTTATCAGTCGACATGAGAGCCGATGAG
GATAATCTGTACCGGGAGCAACTGCCCAATGTGAGCACGCTTATTAGGGA
TGGCGGTCGTAAGCTGTGCCGTCCGTCCACCGTGACCAACAAGTTCCCGA
TCCTGAAGTGGCTACCTCGTTACCGATTGGAGTACATCATGCAGGACTTT
ATTGCGGGATTCACGGTGGGATTAACGACTATTCCCCAGGCGATTGCCTA
TGGAGTGGTGGCCGGCTTGGAGCCGCAGTATGGTTTATACTCCGCCTTCA
TGGGTTGCTTCACATACATCGTGTTTGGTTCCTGCAAAGATGTCACAATT
GCCACAACCGCCATCATGGCTCTAATGGTCAACCAGTATGCCACTATCAG
TCCGGATTATGCGGTTCTGGTGTGTTTCCTAGCTGGTTGCATTGTACTTC
TACTTGGATTGCTCAACATGGGTGTACTGGTCAGGTTCATTTCGATTCCC
GTAATCACTGGCTTCACCATGGCGGCGGCCACCACAATTGGCAGTGCCCA
GATCAACAACATCGTGGGTCTGACCAGTCCTTCGAATGATTTACTGCCCG
CCTGGAAGAATTTCTTCACCCACTTGACGTCAATTAGGCTCTGGGATGCC
CTGCTGGGTGTCTCATCTCTGGTGTTCCTGTTGCTCATGACGCGTGTTAA
AAGACATCAAATGGGGCAATCGTATATTCTGGAAGTACCTTGGTCTCTCC
CGCAACGCCCTGGCTGTGATCTTTGGCACCTTTTTGGCCTACATCCTCAG
TCGAGATGGGAATCAACCCTTCCGTGTCACTGGAAACATTACGGCCGGAG
TACCGCCCTTTCCGGCTGCCGCCCTTTAGCACCACCGTAGATGGAGAGTA
CGTTTTCTTTGGCGAGATGATCAGCACTGTCGCGCATCCTTGGGATTCAT
CCCCTTGATTTCGATCCTGGAAATAGTACCCTATCGAAGCATTTTCTAAG
GGAAAAATTGTAAACGCATCCGCAGGAAATGGTGGCACTGGAATGTGCAA
CTTCATGGTCAGCTTTGTTGCTCTCCATGACCGTAACGGATCTTTAACCG
CACGGAATGTGAATAATGCCAGTGGGTGGAAAAACCACTGGGGTGAACTG
TACACGTGCCTTGGTCTCTCCTTATGACATTTGGATTCCTACCACTTCAT
CTGATCCATTACCGCTGGCTGCAAATATTATATGACGCGAAGATTATCCG
CTCT
FMO03162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5002-RA | 1998 | CG5002-RA | 143..1275 | 36..1165 | 5065 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17750771..17751071 | 51..351 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 17751777..17752055 | 700..978 | 1255 | 98.2 | Plus |
| 2R | 25286936 | 2R | 17751130..17751357 | 351..578 | 1140 | 100 | Plus |
| 2R | 25286936 | 2R | 17751430..17751545 | 577..692 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 17752134..17752264 | 996..1126 | 270 | 88.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:49 has no hits.
FMO03162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:38 Download gff for
FMO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 134..1229 | 32..1126 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:56 Download gff for
FMO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 139..1234 | 32..1126 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:49 Download gff for
FMO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 139..1234 | 32..1126 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:49 Download gff for
FMO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17750772..17751071 | 52..351 | 100 | -> | Plus |
| 2R | 17751131..17751355 | 352..576 | 100 | -> | Plus |
| 2R | 17751430..17751545 | 577..692 | 100 | -> | Plus |
| 2R | 17751771..17752074 | 693..995 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:56 Download gff for
FMO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13638277..13638576 | 52..351 | 100 | -> | Plus |
| arm_2R | 13638636..13638860 | 352..576 | 100 | -> | Plus |
| arm_2R | 13638935..13639050 | 577..692 | 100 | -> | Plus |
| arm_2R | 13639276..13639579 | 693..995 | 97 | -> | Plus |
