FMO03163.5prime Sequence
1237 bp (1031 high quality bases) assembled on 2008-07-07
> FMO03163.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGATAAAACC
AAGGAAGACCTGAAGCGCAGTGCCCCGGAGGAGGAGAATGAGCCCCAGGA
GGAATCTGTGTCATCCGAAAAAGAGGCGGAAGGCGAGGAAGACGCCTGGA
TTGGACCCATGCCTTCAGAGCAGAGCGCTCCCGCGCCCGCCAAGAAAAAG
AAGGTCCTGCCCTATGAACACATCTACCTGGAAAACCTGCCCAATGCTGA
GAGCTACGAGAGGAGCTACATGCACCGCGATGTGATCACTCATTTGGTGT
GCACGAAGACGGATTTCGTAGTGACCGCCAGTCTGGATGGACACATCAAA
TTCTGGAAGAAGGGCGAGCTGGGCATCGAGTTCGTCAAGCACTTTCGCAG
CCACCTAGTACCCATCAAATCACTGACCACCAACGACAGCGGCACGCTGC
TCTGCTCGGCGGCCACGGATCAGACAGCCAAGGTCTTCGATGTTGTCAAC
TTCGACATGATCAACATCATTCGATTGGGCTACACACCGCAGTGCAGTGA
GTGGATAAATGGGCCGGGAGATGCCGTACAAGCACTGGCCATCTCGGATT
CAGAGAGTAGCCGCATACACATCTACGACGGGCAAGGAGGCGGAGAAGCC
CTTCACACCTTGGAGAAACTTCACTCGGCGCCCGTGGTGGCGATGTGCTT
GAATGTGGCCATGGAGACCGTCATTTCTGTCGATCGCAATGGCATTCTCG
AATACTGGCAAAACTCGAAGTACGACTACAAGTTTCCACAGCGTCTGGTG
ATTTTGACTCCAAGCTAGACACAAGCCTCTTTGAGTTTGCCAAACAGAAG
ACCCAAGTCACGGGTTTAGCCGCCACGCCGGATGGAAAGCGTTTTGCCGC
ATTTTCACAGATCGTAAGGTCCGCGTCTTTCAGTTCAACACGGGCAAGTT
GATCCGGGTATTCGATGAAGCTCTATTCTACATACACCCAAATGCAGCAG
ACGAAGCACGCCCTGCCCAACATGGAGTTTGGCAGAAGATGGCGCTGAAC
GGGATCTTGGGAAGACTGCCAGATTCAACCCTTATATTTTTGTTCGACAG
CACTGGCACTTCTGCTTACCCACGGATGTGGGCCATCAGGTGAATCAATG
TGGGTACACGAATTGCGTGCTTCATTCAGAAAATTCGGAACATACGGGCT
TTCAGGGTTGCCTTGTGTTTCACAGGGAAGAAATATT
FMO03163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3511-RB | 2044 | CG3511-RB | 58..1183 | 36..1153 | 5160 | 98 | Plus |
| CG3511-RA | 2202 | CG3511-RA | 216..1341 | 36..1153 | 5160 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24572620..24572857 | 589..825 | 1125 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24572124..24572328 | 204..408 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 24572915..24573128 | 825..1038 | 960 | 98.6 | Plus |
| 2R | 25286936 | 2R | 24572384..24572569 | 407..592 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 24571906..24572074 | 36..204 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:40 has no hits.
FMO03163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:04 Download gff for
FMO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 174..1275 | 36..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:42 Download gff for
FMO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 216..1317 | 36..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:39 Download gff for
FMO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 216..1317 | 36..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:39 Download gff for
FMO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24571906..24572074 | 36..204 | 100 | -> | Plus |
| 2R | 24572125..24572328 | 205..408 | 100 | -> | Plus |
| 2R | 24572386..24572569 | 409..592 | 100 | -> | Plus |
| 2R | 24572624..24572856 | 593..824 | 99 | -> | Plus |
| 2R | 24572915..24573128 | 825..1038 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:42 Download gff for
FMO03163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20459429..20459597 | 36..204 | 100 | -> | Plus |
| arm_2R | 20459648..20459851 | 205..408 | 100 | -> | Plus |
| arm_2R | 20459909..20460092 | 409..592 | 100 | -> | Plus |
| arm_2R | 20460147..20460379 | 593..824 | 99 | -> | Plus |
| arm_2R | 20460438..20460651 | 825..1038 | 98 | -> | Plus |
