FMO03165.5prime Sequence
1237 bp (979 high quality bases) assembled on 2008-07-07
> FMO03165.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGTCTGTGAATGCGGATC
TGCAGAGAGAGCGGGCGGCGGCCACCTTGGACAGCGAGGACTTTGCCCGC
TGGTGGGCGGGTGGCTCTGGGCAGCTGGAGGAGCGCCGCGCCCTGGAAAG
GCGTTTCTATGAGGATCCCGACTTCGCGGAGCCAGTGCATCCGAGCTGTC
TGTCATACAAGGAGCGCTACGAACAGACCGTGGCCCGATCCACACGCTTC
CTGGCCAAACTGCGCCAATGGCAGCGGGAGAAGCAGCCACAACTTCAGCT
TAGTGTGAATATGCTGAGGGACTTTCGGCTGCTACTCTCCGGATCCCTGG
GCACGGGCCTCTTCCAGCAGAGCTTCCCCCTTCGGGTGCATTTCTCCATG
TTCATGACCACCTTGCTGAGCCAGGGAACCGAGGAGCAGCAGGCCCAGTG
GCTCAATCGATCCTGGCACATGGACGGCGTCCTGGGCACCTATGCGCAAA
CGGAGCTGGGTCACGGCACCTTTGTCCGGGGCCTGGAAACCCGAGCCGAC
TACGATCCCATCACGCAGGAATTCATCCTGAACACCCCAACGCAAAGTTC
ATACAAAGTGGTGGCCCGGCGGACTTGGTAATACCGCCAATGTGGCCATT
GTGCTGGCCCAGCTATATGTGAAGGGCAAGCATTATGGCTTGCAATCATT
TGTGGTGAGGATCAGGGACGAGAGGACACACGAACCGTTGACTGGAGTCG
ATGTGGGCGATATAGGACCTCGCCTGGGTGGCAATGGCGTTAACAACGGC
TTTCTGGGACTCCGCGACGTGCGGATACCGCGCAATCAAATGCTGATGAA
GACGCCCAAGTCCTGAACGACGGCACCTTTCGTCCAGGGTAGACCTCCGC
TGCTGCTCTACGGCACAATGGTCTTATGTGCGGGTAATTACCGAGAGGAT
GTGCTCTTTGGACTGCTCCAGGCTGCCACCATTGCCACCAGTGATTCCGT
GGTGCGTCCGCCGAGCCCGATTACGCGTATCAGCCCGGAGGTCTCTGTTT
GGAATCCCATCACACCACAGCAAGATTCTACCCGAAATTGCCTCAAGATG
TCCTATCCCTGGCATCGATTGGCTGGGGGCCTTCAGCAGGACGTACTCTG
CCAACTGGGAGGATGAAGCGAAGGACCCAATCCGTGCGACCGCACGCCCT
TGACTTCGTTGCTCTCTAAGAGGCGGGTGTCTACTAC
FMO03165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4586-RA | 2240 | CG4586-RA | 100..1240 | 31..1167 | 4945 | 96.5 | Plus |
| CG5009-RA | 2506 | CG5009-RA | 765..902 | 485..623 | 235 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6970017..6970976 | 31..991 | 4535 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17762497..17762634 | 485..623 | 210 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:15 has no hits.
FMO03165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:06 Download gff for
FMO03165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 65..1095 | 18..1050 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:33 Download gff for
FMO03165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 89..1119 | 18..1050 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:04 Download gff for
FMO03165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4586-RA | 88..1118 | 18..1050 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:04 Download gff for
FMO03165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6970005..6970976 | 19..991 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:33 Download gff for
FMO03165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6864038..6865009 | 19..991 | 98 | -> | Plus |
