FMO03166.5prime Sequence
1235 bp (1041 high quality bases) assembled on 2008-07-07
> FMO03166.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGCCGAAGTTGAAGCCGT
GCAGATAATTGCAGAATCTTTGAAGCAACAGGGCGTGGAATATGTCTTTG
GTATCATCGGCATCCCGGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCC
GGACTGAAGTACATCGGAATGCGCAACGAGCAAGCCGCCTGCTATGCTGC
CCAGGCCATTGGCTACCTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGT
CCGGACCGGGACTGCTCCATGTTACGGGTGGCATGGCCAATGCCCAGGTG
AACTGCTGGCCACTAATCGTTATTGGTGGTGCCACCAACCAGGATCACGA
GGGAATCGGAGGCTTTCAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGT
ACTGCAAGTACGCTGCCCGTCCGGCCACTGCTGCTCTAATTCCATTGCAC
GTGGAAAAAGCGGTGCGCTATGCCACCTATGGACGCCCTGGCGTTGCCTA
CCTGGACTTCCCTGGCAATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCA
TCTACAAGGCGCTGGCCCATCCGGCTCCCCCACTAGCCTATCCCCCGCAC
GATGATGTGATCAGGGCCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTT
GGTGATCGTGGGCAAGGGTTCCGCCTACGCCCATGCCGAGAACACACTGC
GCCACTTCATCGAGAACACCAACCTGCCCTTCCTCCCCACTCCCATGGGC
AAGGGCGTTGTATCCGATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCAC
CCTGGCCTTGCAAAAGGCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCA
ACTGGATTCTCCATTTCGGAAAGCCTCCACGCTACGACAAGGACGTGAAG
TTTATCCAGGTGGACATCATCCTGAGGAGCTGCATAACTTCGGTTGTGCT
TCGTGGCCATCCAGCCGGACATCCGTCCATTTCGCGAGCAATTGTTTGAG
CAAATGACGCTGTTAACTTCCGCTCGCTACGAGCAGGATTGGTGGAAGCA
GTTGGCCGGTCAGTGCCAGGCAGAACGCGAAATCGTGCAAAGATGTCTTG
AACACGAGACGCGCTGACTACTTACCCGGTTTCACATTCGTCTCCCGGTT
GAGAGCGTGGCTGTACCAGGACCGATCTTGTTATGTGAGGACCACCAATG
AATTTGTCCTCCATGCGTGCGTAAAACGACAACCT
FMO03166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11208-RA | 1984 | CG11208-RA | 140..1241 | 31..1122 | 5005 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20243627..20244413 | 1058..277 | 3540 | 97.8 | Minus |
| 2R | 25286936 | 2R | 20244483..20244682 | 279..80 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 20245198..20245249 | 82..31 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:40:07 has no hits.
FMO03166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:40 Download gff for
FMO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 151..1205 | 31..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:01 Download gff for
FMO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 140..1194 | 31..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:59 Download gff for
FMO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 140..1194 | 31..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:59 Download gff for
FMO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20243627..20244412 | 278..1058 | 98 | <- | Minus |
| 2R | 20244485..20244680 | 82..277 | 100 | <- | Minus |
| 2R | 20245199..20245249 | 31..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:01 Download gff for
FMO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16131132..16131917 | 278..1058 | 98 | <- | Minus |
| arm_2R | 16131990..16132185 | 82..277 | 100 | <- | Minus |
| arm_2R | 16132704..16132754 | 31..81 | 100 | | Minus |
