FMO03168.5prime Sequence
1247 bp (987 high quality bases) assembled on 2008-07-07
> FMO03168.5prime
CATTATACGAAGTTATCAGTCGACATGTCCAGCTCCGGAAGAAAGCGCAA
GCAGCAACTTAAGCCGCGTCAGGACGATCACCGGTCGCCGGTGAAGCGAC
GCAGTGTGGACATCAAGTCGGAACCCTTGGACGGCTATCCGGCGCTAGCA
GACTACGATTTAAGTACGGCCGATATCAAGCCGGATCTCACTGAACTCCA
ATTGCAGCTGGTGGCGGAGCAGCAGGCGGCCAGCAACACCATTCGCTTGG
AATTGGAACAGCAAGAGAGTGATTCCGACGAGGATGGCTACTCAGAGCTC
GATTACCAAGCTGAAGATGTCTTCTGTCAGGACGATATGGATGACTACGA
TCCAGATTGGTCCAGCCAGCAGACGGGTTCCCGACTGCTCTTCAAATTTC
CCATCCAGCAGAGTGGCCTGAAATTCGGACAACGCTTCCAGGGACCACAG
CACTACTTCAACCAAGTGCTGGGAAATCGCTCCAAGTTCTTCAGTTCCCT
GGCCCAAAGCTGCAACCTAAAGGGAGGAGAGCTCAAGTCCAATCCCACAA
CTGCCGAAGAAATGGAAATCTTTATGGCGCTTTCCCTGCTTATGTGTGAC
CTGAAGCTGGAGCACCTATCGGATTACTGGAGCACTAACATGTTTTACGG
TCTCGTCGGATTCTCTGGGAAGATTCCTCTGGAACGGTATCAGCAGCTGC
TGCACTGCCTTAAACTTTGATGCACCGCAGCTACAAGCGGGCAGAGCCAA
AGTGAAGAAACTCTCTACTGCTAGACTTTATCAACGAGCGTATGGAAGAG
ATATACATTTGTGGCCAGCAACTGGTGCTCAATGAACCTATCACTCTGTG
GAGGGGTGCATTAAGATACCAGGATGAACTTCCAAACAATTTCCGCACCA
ACGCACTACTTGCTGCATATGCTAACTGAGCAGAGCGGTTTGGTGGTGAA
GATTCTACCGGAGATTGTGCGGAAAGAAAACCCACCGGGCATGGGTACCC
CATTTCCCGGCAGTTGGTGGGAGCACCGAACCAGATTGTCCTGAAACTAA
AGGGAAGGGTTCCATGGAGACGCCACTGTGGTACCCCTCAGTCTCTATGG
GAGCTTACGGCCTGCCTCACGAATTGGCCAGAAAGCACCTATTGCCACTG
GCCTGCTGGGACAGGATAGAAATTGGCCACGGTAAGGACCTGGTGACACA
GCGGCTTGTATTTCACCAGCGATCTTCCACTCAAGCTACTGATGCTC
FMO03168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 220..1411 | 21..1220 | 5055 | 95.9 | Plus |
| CG9839-RA | 2064 | CG9839-RA | 98..1289 | 21..1220 | 5055 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8804413..8805127 | 1050..331 | 3135 | 97.9 | Minus |
| 3R | 32079331 | 3R | 8805192..8805502 | 331..21 | 1540 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:12 has no hits.
FMO03168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:06 Download gff for
FMO03168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 125..1281 | 17..1180 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:16 Download gff for
FMO03168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..1250 | 17..1180 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:29 Download gff for
FMO03168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..1250 | 17..1180 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:29 Download gff for
FMO03168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8804389..8805126 | 332..1072 | 97 | <- | Minus |
| 3R | 8805192..8805506 | 17..331 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:16 Download gff for
FMO03168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4630111..4630848 | 332..1072 | 97 | <- | Minus |
| arm_3R | 4630914..4631228 | 17..331 | 99 | | Minus |
