FMO03169.5prime Sequence
1214 bp (907 high quality bases) assembled on 2008-07-07
> FMO03169.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGAAGAGTGT
CGGTAGTGCGTGCGCGCAAATTGCGATCCTTTTGGCCATCACTTGCAGTG
CATCGGAACTTGCGTCGGCCGTGTTGCATCAGGATACGTACGAGATAGTG
GACACAAATCTGCCAAATATTGCCGCATACGGAGTAGTGCCACTGAGAAC
GGATCGACTGCACCGTCAAAGACGAACCGTGCCCGTATCGCCACCGTTGC
CCGCAGTCACCACATACCGAGGCGCAGTGTCTGCCAATGCCACTGCGGAA
GCAGGAGGAGCGGCAGGAGCTGGCGGAGGAGTGGCTGCAGAAACCACGGT
CACCACCGTGGACAATAAGGCAGCGGGCGGTAGTGTGTCCTACAATGTGC
ACAATGTCGGAGTCAATGGCACTGGACAGCGCAAGACATACGATGTGGCA
CCGGCCGTCGATTCCAATACCACTAGCCAAATGGCGCCGGCTACCAAGAA
GCCCACACTATTGGGCCAGTCGGGCAATCCCAAGAAGGTGGCATCTTCTG
TCGTCGCTGCAACCATGACGGATCCCTCACCGGCGGTCATCGATGTGGAC
GTGTCGAAAGTAGTGGACGTGCCCGAGGAAGAGATCGAGGCAGCGGTGAA
GAATGCATCGCTGAAGGAGAGCGTTGACTTCCACGAAATACTACAACAGT
GTGCTCTATGAGAACAAGGGACGAGGTGGCCTCACTGTGGACCGAACTGA
AGGCGACGCCCGAAAATATCATGCTTTCGTCGTCCCATCGCAGGCCATGA
CGGTGGAGCTCAAGTTTGATTTCCCCTTCTACGGACACTTTGTGCGCAAC
ATCACGGTGGCCCACCGGCGGATTCCTTTACACCGGCGAGTATGTCCACT
CTTGGCTGCGCCACCCAGTACATTGCCCCGCTGATGGCCAATTTCCACAC
GAGCATGTCCATCGATTCATTTTCCGATTGCATGACATGGAACCGCCTTC
CCCGCATGTGAGAAAATGTGCACGCTGCAGGACAGTCGATTGGCCATGTT
ACTTCACGTGAACCTGTACAAAATGGCAACTGGTTTTCCATACATGCTGT
ACCAGACATCAATCTCTTAGTACGGACATCCGGTCAAGTCGGCTTCGACC
CTAATTTCCGAAAGTGCAATTTCTTTGCCCGCAGAAGAGAAACGCTTGTA
GAACTCACACGTGC
FMO03169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0289-RC | 3493 | CG2221-RC | 63..1136 | 37..1099 | 4640 | 96.5 | Plus |
| l(1)G0289-RB | 2328 | CG2221-RB | 63..1136 | 37..1099 | 4640 | 96.5 | Plus |
| l(1)G0289-RA | 2856 | CG2221-RA | 63..1136 | 37..1099 | 4640 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10359300..10360163 | 987..125 | 3915 | 98.4 | Minus |
| X | 23542271 | X | 10366124..10366211 | 124..37 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:36 has no hits.
FMO03169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:17 Download gff for
FMO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 103..1089 | 37..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:13 Download gff for
FMO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 63..1049 | 37..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:03 Download gff for
FMO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0289-RA | 63..1049 | 37..1020 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:03 Download gff for
FMO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10366124..10366211 | 37..124 | 100 | | Minus |
| X | 10359297..10360163 | 125..989 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:13 Download gff for
FMO03169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10253330..10254196 | 125..989 | 98 | <- | Minus |
| arm_X | 10260157..10260244 | 37..124 | 100 | | Minus |
