FMO03171.5prime Sequence
1212 bp (1010 high quality bases) assembled on 2008-07-07
> FMO03171.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAAGAACAAGC
TGAATCTGGTGCTGCCGCCGGTAAATACGGAGGCAACTGTTGCCGCCGCC
ACAGTGGCGCCGACGCCGCCATTCAAAACCCCCTCGGGCACAGACACACA
CAGTTTGCTGGGGAAGCCCAAGACGAGCATCGATGCGCTGACAGAGACGC
TGGAGGGTCTGGACATGGGCGACACGGAACGCAAGCGGATCAAGATGTTC
CTCAGCCAGAAGGAGAAGATCGGCGAGCTGTCCGACGAGGATCTGGAGAA
GCTGGGCGAGCTCGGATCGGGCAATGGCGGCGTGGTGATGAAGGTCCGGC
ACACGCACACACACCTGATCATGGCCAGGAAACTGATCCATCTGGAGGTG
AAGCCGGCGATCAAGAAACAGATCCTGCGCGAACTGAAAGTCCTGCACGA
ATGTAATTTCCCGCACATTGTCGGTTTCTACGGCGCCTTCTACAGCGACG
GCGAGATCAGTATCTGCATGGAGTATATGGACGGTGGATCACTTGACCTG
ATCCTCAAGCGGGCCGGTCGAATACCAGAGTCCATTCTCGGCAGGATCAC
GCTGGCGGTGCTCAAGGGCTTGAGCTATCTGCGCGACAATCACGCCATCA
TCCACCGTGACGTGAAGCCGAGCAATATCCTCGTCAATAGCAGCGGCGAG
ATCAAGATCTGTGATTTCGGCGTCTCCGGTCAACTGATCGACTCGATGGC
CAACTCCTTTGTGGGCACCCGTAGCTATATGTCGCCGGAGCGATTGCAGG
GCACCCACTACTCCGTGCAGTCGGACATCTGGTCGTTGGGTCTGTCGCTG
GTGGAGATGGCCATCGGCATGTACCCCATCCCGCCGCCAAACACCGCCAC
CCTGGAGTCGATATTCGCCGACAATGCGGAGGAGAGCGGCCAGCCGACGG
ACGAGCCCAGGGCAATGGTCATCTTCGAGCTGCTGGATTATATGTAAACG
AACCGCCGCCCAGGCTAGAGCACAGATCTTCTCCACCGAGTCAAGGACTT
CGTGACATCTGCCTGAAAACGCCCGACGAGCGGGCAGATTCAGAACCCTG
CCTGAATCATTCGAGGATACGCAAGCCGAATGGGAGGAGGTGAATTATCG
CTGATGTCCAGAACATGGACTTGCGCCATACGAGCCAAAGCGTTATAATA
GCATTGCACCTA
FMO03171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsor1-RA | 1799 | CG15793-RA | 458..1634 | 35..1197 | 5225 | 97.1 | Plus |
| Dsor1-RB | 1503 | CG15793-RB | 171..1338 | 35..1197 | 5080 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9248542..9249181 | 145..784 | 3200 | 100 | Plus |
| X | 23542271 | X | 9249374..9249686 | 784..1089 | 1225 | 96.5 | Plus |
| X | 23542271 | X | 9247799..9247908 | 35..144 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:43 has no hits.
FMO03171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:05 Download gff for
FMO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 3..1087 | 33..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:53 Download gff for
FMO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 449..1540 | 24..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:44 Download gff for
FMO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 449..1540 | 24..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:44 Download gff for
FMO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9247790..9247908 | 24..144 | 96 | -> | Plus |
| X | 9248542..9249181 | 145..784 | 100 | -> | Plus |
| X | 9249375..9249701 | 785..1102 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:53 Download gff for
FMO03171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9141823..9141941 | 24..144 | 96 | -> | Plus |
| arm_X | 9142575..9143214 | 145..784 | 100 | -> | Plus |
| arm_X | 9143408..9143734 | 785..1102 | 95 | -> | Plus |
