FMO03172.5prime Sequence
1226 bp (986 high quality bases) assembled on 2008-07-07
> FMO03172.5prime
GTATAGCATACCTAATACCAAGTTATCAGTCGACATGGAGGAATCCAATC
ACGGTTCGGCTGGCTGTGAAAACGTATCGCAGTTCATGCTCGATGACCTA
CAATTGGCAGCAGAGCTGGGAAAAACGCTCCTGGAACGCAATAAGGAGCT
GGAAACCTTCATCAAGGAGTACAAGATTAAGGGGGATGAGCAGGAACTGG
AGATCTTGCATCTGCGCAAGCACATTAATGCGATGACCGAGGTGAATGAT
TCACGGCTTAAGGTCTACGAGCAGCTGGAAGTGGGCATTCAGGATCTGGA
GCGTGCCAATCAGCGGCTAAATCTGGAGAAGAATCGGGACAAGAAGCAGA
TTAAGACGCTGACCACCAACACGGAAGTCCTGGAAGCCCGCTGCGAGGAA
CTGAGTCAACTTCTGAGCGATGCTCGGCAATCCCTGAGCACCGAGCGGCG
GAAGGTGGATCAGTACCAGCAGGAACGCTATAGGATGCAGCATTCGACCG
AGGGTTCTGTGTCCAGTCACAGCATTCAATCGCTGTGCAAGGAGCAGAGT
GTTGAGTTCTCCAAACTAGATGTTATGGCCATAGCGAACTCGACAGGATT
GGAGGATATCTCCTTCAGTAATGCCACCATGTGCGAGAGGACCGCCGTTA
AGGGTGAAGACAACGAGGAATTGGTAAAGCTGCTCAGCGAAATGGAGGTG
TTAAAACGTGACTTCTTGGCCGAACAGCAGCGGTGCACCGAGCTGGAGGA
GCAGTTGGTGACCATAATCCAAGACAACCAAGGTCTGCAGACACGTCTGC
TGGAGAACAGTGCCAATGAGGGAACAATGTCGATGCACGAGGAGTTCAGC
CTCCTGGACGACGTGAGACAAGGCCAATGTGTAGTCGCTGCCTGAGGATA
ATAACGAAAGCACACAATAATGGATGATCAATCCTCCATTGCCCCAACCG
AAGAAATCTACGAGATGACGATCGCAGCATACTAAGCGAAGCAACTCGAA
ATGCCATATAGTGGGTGCGGAATTATAGGAACGCTTCGGGATTCCCGAAG
AACTTCATTCCAAACTCTAGCGACAAACCAAATTCTTTATCGGACCTTAG
TCAAGAAATATGAGGCCTGGGTGGGAGGTGAAGAGAACCTGGATGGCGTC
AGAGACAACTCCCGAGAGTCCATGGAAACTGACGGATCCGTCAGGCAAAA
TTCAGAAACATGGTTACGCGCCTCAG
FMO03172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cen-RB | 2706 | CG1962-RB | 135..1242 | 35..1140 | 4965 | 97.4 | Plus |
| Cen-RA | 2841 | CG1962-RA | 270..1377 | 35..1140 | 4965 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20680385..20681492 | 1140..35 | 4720 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:17 has no hits.
FMO03172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:01 Download gff for
FMO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1962-RA | 260..1390 | 28..1155 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:07 Download gff for
FMO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 262..1392 | 28..1155 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:00 Download gff for
FMO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cen-RA | 262..1392 | 28..1155 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:00 Download gff for
FMO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20680355..20681500 | 28..1168 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:07 Download gff for
FMO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20680355..20681500 | 28..1168 | 96 | | Minus |
