FMO03176.5prime Sequence
455 bp (264 high quality bases) assembled on 2008-07-07
> FMO03176.5prime
ACTTTATACGAAGTTATCAATCCACATGTTCGTAAACGAAGTTCACGATG
TGAAGATCTACAACCTGAGCGCCGGCAAGTCGGTGCCAAATTGGCTGACG
GATCGGCGAAAGCGGTCACAGCTCATGAAAAAGGTGGACTCCCGGAAACA
GATCGAGCTCATCCAGGACTTCGATATGCCCGGCGTCTGCACCATCATCC
GCATGAGTCCCGACCAACAGTACATCCTGGCCACCGGCACTTACAAGCCG
CGCGTCAAGTGCTTCGAGGTGTCCAACCTGTCTATCAAATTCTAGCGCTG
CTTCTACGCCGAGGTGACCACCTTTGAGGTGATTAGCGACGACTACCGCA
AGATGGTGTTCCTGCAATGCGATCGCTATGTGGAGATCCATGCGGCCCAC
GGGCGGCACTACAGACTAAGGATACCGCGCTTTGAACGCGACATGAACTA
CCACA
FMO03176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)34Fd-RA | 2321 | CG7516-RA | 89..518 | 26..455 | 2000 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14354510..14354873 | 455..92 | 1700 | 97.8 | Minus |
| 2L | 23513712 | 2L | 14354935..14354997 | 88..26 | 300 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:12 has no hits.
FMO03176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:44 Download gff for
FMO03176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7516-RA | 75..512 | 17..454 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:32 Download gff for
FMO03176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 80..517 | 17..454 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:51 Download gff for
FMO03176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)34Fd-RA | 80..517 | 17..454 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:51 Download gff for
FMO03176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14354511..14354873 | 92..454 | 97 | <- | Minus |
| 2L | 14354932..14355006 | 17..91 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:32 Download gff for
FMO03176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14354511..14354873 | 92..454 | 97 | <- | Minus |
| arm_2L | 14354932..14355006 | 17..91 | 92 | | Minus |
