FMO03177.5prime Sequence
976 bp (648 high quality bases) assembled on 2008-07-07
> FMO03177.5prime
CGTATAGCATACAAAAAACGAAGTTATCAGTCGACATGGTCGTGCAAGAA
GATCATCCAAATACTGGGGACGTTCAGGAAAAGACGGAGACTGCTCCGGT
GGCAGAGCCCTCCAAGATCTTCACGGTGGAGATTCTGCACATGATTAAGG
ATGCCCAGCAACAACACGGCCTGCGCCACGGCGACTTCCAGAGGTACCGC
GGATACTGCAGCCGCCGCATCCGTCGATTGAGGAAGGCCCTGAAGTACCC
CCAGGGCGACAAGCGGCACTTCAAAAGACGCGACGTGACCATTGGCCAAT
TGACAGGCAAGAAGGCGGACGAGCGTTTCATCCACATCCCATTGATCTGC
GCCGAGCGGGCCTGGGCGTATGCCATGCAGCTCAAGCAGGAGTCCAATAC
GGAGCCGCGAAAGCGTTTCCATCTGGTCAACAAGCTGCGCAGGGCCTGTT
TCTATGCCCTCCAGCTCCAGGAGTTGTGTAATACGGAGGCTTTCAATGCG
CGCACTAAGCTAGAGTGCAAAGCCTATGTTGCCTGCATGCACGGAACCCT
GCACTTTGAGCTGCAGCTATGGAAAACCGCTGGCGAGCACCTAAAGCGCG
CCCAAGTGGTGTACGAAAACCTGGGCAAGGCTCTGCCCGAAGATGAACAA
GAGCTTTACCGCGCTAAGGTTAATGAATTTACGCCCAATCTGCGCTACTG
CGCCTACAACATCAGCGGTGGCGCCAGTGGCGGTAGATCGACGAGATCCT
GGAGCTGCGCGCTCAGGGAGTGCTTGAGAATCTTGACTTACTGGTCAGTC
AGACCAAGACGGAGAGCAGCGAGGGCCTGCAGACGATCGACTGGAGCGGT
CGCAATGTCACGTGCGTCCAGAGAAGGTGCGTTTGTTCTGCTCAGTGCTC
AGGAGTTGGACAGTCGCTGGCCAGACCACAAGCAGATGCAAGATAAAATT
GATTGAACGTATTTTTGATGGACTGC
FMO03177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp68-RA | 2132 | CG5064-RA | 79..1026 | 36..976 | 4340 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8975737..8976237 | 483..976 | 1895 | 96 | Plus |
| 3L | 28110227 | 3L | 8975325..8975674 | 133..482 | 1750 | 100 | Plus |
| 3L | 28110227 | 3L | 8975124..8975220 | 36..132 | 470 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:19 has no hits.
FMO03177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:02 Download gff for
FMO03177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 72..1024 | 29..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:58 Download gff for
FMO03177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 74..1026 | 29..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:57 Download gff for
FMO03177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp68-RA | 74..1026 | 29..976 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:57 Download gff for
FMO03177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8975114..8975220 | 23..132 | 91 | -> | Plus |
| 3L | 8975325..8975674 | 133..482 | 100 | -> | Plus |
| 3L | 8975737..8976237 | 483..976 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:58 Download gff for
FMO03177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8968214..8968320 | 23..132 | 91 | -> | Plus |
| arm_3L | 8968425..8968774 | 133..482 | 100 | -> | Plus |
| arm_3L | 8968837..8969337 | 483..976 | 96 | | Plus |
