FMO03178.5prime Sequence
1071 bp (889 high quality bases) assembled on 2008-07-07
> FMO03178.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGCCACAGCATC
GCTGGACGCACTGCAGGCAGCCTATGTGGACTTCAGTGAGATAACACTAA
GAGAGAAAGTCGGCCATGGGTCCTACGGAGTGGTCTGCAAGGCCGTTTGG
CGCGACAAGCTGGTTGCCGTCAAGGAGTTCTTCGCCAGCGCCGAGCAGAA
GGACATCGAGAAGGAGGTGAAGCAGTTGTCGCGCGTGAAGCACCCGAACA
TCATCGCTCTGCACGGGATATCCTCGTACCAGCAGGCCACCTACCTGATA
ATGGAGTTCGCCGAAGGTGGATCGCTGCACAACTTCCTTCACGGCAAGGT
GAAGCCGGCATATTCTCTGGCCCACGCCATGAGCTGGGCGCGCCAATGTG
CAGAGGGTCTGGCATATTTGCATGCCATGACGCCAAAACCACTAATACAT
CGCGACGTGAAGCCGCTGAACCTGCTCTTGACCAACAAGGGACGCAATCT
GAAGATATGCGACTTCGGCACGGTGGCGGACAAGTCGACCATGATGACCA
ACAATCGCGGCAGTGCCGCTTGGATGGCGCCCGAGGTCTTCGAAGGCTCC
AAGTATACGGAGAAGTGTGACATTTTTAGCTGGGCCATTGTTCTATGGGA
GGTTCTGTCCAGGAAGCAGCCCTTTTAAAGGCATCGACAAATGCCTACAC
CATCCAGTGGAAGATCTACAAGGGTGAACGCCCCGCCGCTGCTGACCACT
TGCCCCAAGCGCATCGAGGACCTGATGACCCCCCTGCTGGAAAACGGTGC
CCGAGGATCGCCCGTCGATGCAGTACATAGTGGGCGTTATGCACGAAATC
GTCAAGGAACTATACGGGGGCGGACAAGGCCCTGGAATACACGTTTGTTA
TCACAGATTGTCAACCAAAAAGAGCGACGGGACGGTGGCCGCTCAACCGG
AAAGCCTCATTCGCAAGAGGGGGAACTGAACTCCTCGTCCAAACGTTAAC
CCCTGACAACGGCGGGCCAACGCCATGTGTGACGCGATAGCAATATCAAA
ACCATGTATAGTTCATTGACC
FMO03178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 962..1972 | 37..1051 | 4585 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20522502..20522822 | 726..404 | 1515 | 99.4 | Minus |
| X | 23542271 | X | 20523058..20523360 | 406..104 | 1515 | 100 | Minus |
| X | 23542271 | X | 20522272..20522438 | 900..732 | 715 | 97.6 | Minus |
| X | 23542271 | X | 20523899..20523967 | 105..37 | 345 | 100 | Minus |
| X | 23542271 | X | 20521898..20522035 | 1051..914 | 310 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:32 has no hits.
FMO03178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:19 Download gff for
FMO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 957..1973 | 34..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:30 Download gff for
FMO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 959..1975 | 34..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:47 Download gff for
FMO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 959..1975 | 34..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:47 Download gff for
FMO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20522264..20522445 | 724..906 | 96 | <- | Minus |
| X | 20523059..20523358 | 106..405 | 100 | <- | Minus |
| X | 20523899..20523970 | 34..105 | 98 | | Minus |
| X | 20522505..20522820 | 406..723 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:30 Download gff for
FMO03178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20394086..20394385 | 106..405 | 100 | <- | Minus |
| arm_X | 20394926..20394997 | 34..105 | 98 | | Minus |
| arm_X | 20393291..20393472 | 724..906 | 96 | <- | Minus |
| arm_X | 20393532..20393847 | 406..723 | 99 | <- | Minus |
