FMO03180.5prime Sequence
1141 bp (1048 high quality bases) assembled on 2008-07-07
> FMO03180.5prime
CGTATAGCATACTTAATACGAAGTTATCAGTCGACATGGAAGTGGAATAC
GACGACTCTGGTTGGCAGGGCCGCGCCAAAGGACAAACCAATCCGGAGGA
AACGCTTGAGGACAATCCGCAGAAGACGATACAGGAATGCCTGGAGAAGT
TCCTCACACCGGACTACATCATGGAGCCGGGGATATTTACGCAGCTGAAG
CGCTACTTTCAGTCGGGCGGATCTCCGGAGGAGGTTATATCGATGCTATC
CGAGAACTACAAGGCGGTGGCCCAGATGGCCAACCTGCTTGCGGAATGGC
TCATCCTGGCGGGCGTCAAGGTTACCGAAGTCCAGGCCATGGTGGAGAAT
CATCTCAAGGAAATGATTCTTAAGTCCTTCGATCCCAAGAAGGCGGACAC
CATATTCACGGAGGAGGGTGAGACGCCCGACTGGCTAACCGAGATGATCG
ACCACTATACGTGGCGCTCGCTAATCTACCGACTGGCCGAAGAATATCCC
GATTGTCTAATGCTGAACTTTACAATCAAGTTGATCTCGGACGCGGGCTT
CCAGAGCGAGATCACTTCCATTTCGACAGCGGCACAGCAGATTGAGGTTT
TCTCGCGGGTTCTAAAGACCTCGATCGTCAAATTTCTAAACAATCCGGAT
GATGTGCACGGTGCCATTCAGGAGTGCGCACGAATGGTCTGCCATGGCCA
GCACACTTACGTATACTCCCAGGTGCTCATCCAGGGTCCTCAGCCAGGAG
CAGAAGGGTGGGTTCAACATGAAGCGGCTCTCTCAGGAAATTATTAAATA
CGCCCTGCAGAACAATCAAAATGTAACGCCTATTACAATGGCCCTGAATG
GTTCGGCAGTCTATCCGCAAGCATGTCAAGCCCTAACTTCCATGCTCACC
CGCAATACACTGAATCCCGCCGATATCACCGTGCTGTTTCGCAACTACTC
CGGGTTCCGATCCACCGCCCATCGACTTGATACGAAACCCCCAGTTTCTG
GAGCTACTGGAAAACGCGCCTCTTTCGTTCGGGGTAAAATCAATCCCGAG
CACAAACCGAAGTATATGTTTCCTGCTAGCCTACGCGTTCCCGCGTCATT
CGACCGACCGGGCCAAAAAGCGACCATGGACTTGAGCGCAT
FMO03180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TH1-RB | 1967 | CG9984-RB | 85..1184 | 36..1141 | 5155 | 98.3 | Plus |
| TH1-RA | 2297 | CG9984-RA | 85..1184 | 36..1141 | 5155 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16390453..16391177 | 822..97 | 3535 | 99.4 | Minus |
| X | 23542271 | X | 16390118..16390392 | 1088..813 | 1115 | 96.8 | Minus |
| X | 23542271 | X | 16391291..16391354 | 99..36 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:23 has no hits.
FMO03180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:20 Download gff for
FMO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 50..1156 | 29..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:26 Download gff for
FMO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 78..1184 | 29..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:55 Download gff for
FMO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TH1-RA | 78..1184 | 29..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:55 Download gff for
FMO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16390069..16390392 | 813..1141 | 94 | <- | Minus |
| X | 16390463..16391175 | 99..812 | 99 | <- | Minus |
| X | 16391292..16391361 | 29..98 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:26 Download gff for
FMO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16284102..16284425 | 813..1141 | 94 | <- | Minus |
| arm_X | 16284496..16285208 | 99..812 | 99 | <- | Minus |
| arm_X | 16285325..16285394 | 29..98 | 94 | | Minus |
