FMO03181.5prime Sequence
1250 bp (944 high quality bases) assembled on 2008-07-07
> FMO03181.5prime
CGTATAGCATACTTAATACCAAGTTATCAGTCGACATGCTTCTTCGTCCG
TGTGGAAGACTAATCTTTACCAGGTTTTGCAGCAGCATGAAGGTGAAAGT
GCCAGTGAAACAAGGCGTTTTGGTGGGCCGGCAAAAGAAGCTGGTCAATG
GATTGGAGTACAACAGTTTCCTGGGTGTTCCCTACGCGGAACCACCAGTG
GGAGAGCTTCGTTTCCGCAGCCCGCGGCCATTGGAGCGCTTTCAAAAGCA
GGAGCTGGACTGCAGCAAGGAGGGCAACGTGTCTTACCAGCGAGATCCGT
TTACTTTGGAGGTGGCCGGCTCCGAGGACTGCCTTTTCCTTAATGTATAT
GCACCTAAAGTCAAAAGTACGCGGACTCCTTTACCCGTGATGGTCTGGAT
TCATGGTGGAGGCTTCTTCTTCGGCAACGGCAACAGTGACTTCCACTTTC
CCGCCAAGCTCATGGAGCAGGAGGTCATTGTGGTCACCCTGAATTACCGA
CTTGGAGCGCTTGGTTTCCTTAGTCTGCCCGAGGAGGGAATACACGGCAA
TATGGGGCTTAAGGATCAACGTCTGGCCCTCGAATGGGTGCAGGAGAACA
TAGCCAGCTTCAATGGCGATCCGAATAACGTAACGCTCTTCGGCGAGAGT
GCGGGCGGTTCTTCAGTACATCTGCACACTTTTGCCCGGCATGCCAAGCG
ACTATTCCACAAAGGCTATCATGCAGAGTGGAACAGCGAACATGGAATGG
GTTTTCCAGAACGAGGCACCCTGCCAAGACCCGACGACTGGCTGAACTCC
TGGGTGGTGGTGATTTTGGCGGCGACAGCAAAGCACTTTTGACCTTCCTG
CAGTCAGAGAAGGAACACCCACTGCCATTTTGGCTAAAACATTGAAAGTC
TTAAGCCCCGATGAGCGACGACGTCACTTGCCCTTTGCATTCAAGCCAAT
AGTGAAGGACAGCAACAATTCTGATCGTTTTCTGGAGCAAGACATCATGG
AACTGATGCACAAAAAAAAGACTGCCTCGGAAGATGCAAGGTGATAAATG
GGTTACAAACTCCGCCGAAAGGGTTGGCTATTGAAGAAAAAGGCGAAGCA
AAAACTGAAAGTCTAACGAAGATGACTGGCAAGGTTGGGTTCCTGCCAGT
GGGTGCTAATCCAGACTCAAGAGCCAGGAACTGCTCGAATCATCTTCTCT
TACGGCAGAGCCTCATAAGGAAAAAACATGGAAAAACACGTGGTGTGTAA
FMO03181.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clt-RA | 1844 | CG9858-RA | 108..1203 | 36..1138 | 4915 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21617714..21618390 | 1127..443 | 2590 | 94.9 | Minus |
| 2R | 25286936 | 2R | 21618454..21618677 | 442..219 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 21618737..21618864 | 218..91 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 21618914..21618972 | 94..36 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:20 has no hits.
FMO03181.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:10 Download gff for
FMO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 83..1189 | 27..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:46 Download gff for
FMO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 103..1209 | 27..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:24 Download gff for
FMO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 103..1209 | 27..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:24 Download gff for
FMO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21617696..21618390 | 443..1147 | 94 | <- | Minus |
| 2R | 21618454..21618677 | 219..442 | 100 | <- | Minus |
| 2R | 21618737..21618862 | 93..218 | 100 | <- | Minus |
| 2R | 21618916..21618977 | 27..92 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:46 Download gff for
FMO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17505201..17505895 | 443..1147 | 94 | <- | Minus |
| arm_2R | 17505959..17506182 | 219..442 | 100 | <- | Minus |
| arm_2R | 17506242..17506367 | 93..218 | 100 | <- | Minus |
| arm_2R | 17506421..17506482 | 27..92 | 93 | | Minus |
