FMO03182.5prime Sequence
1218 bp (854 high quality bases) assembled on 2008-07-07
> FMO03182.5prime
TCGTATAGCATAAAAAGGCGAAGTTATCAGTCGACATGGATTTGGACTGC
GAGGGCGCTAAAGCTTTGGCTGACGACTCAGGGCACTTTAGCTGCACTAG
CGATGATGGAGAAGGAGATCCTGCTCATAAACCGGCGCCGCAGCCTGAAC
CGGACCAATCGATTTTTCTGGTGCGGCAAGAGCTGCTTCGGACGCGCAGT
GAGGTGCAAAGGCTCTTAAAATCGGAGCAGTGGTACAAGCAGGAGCTTAA
GTCCCAGAAGCACAGCAGGCTACAGACGCTAGAACGATTGTACGCACAGG
AACGGAAGTATTTGATGGAGAACCAGAAGCTGCAGCAAGAATCGATCCGC
CTGCACACACAATGCGCCACTCTGGAGAAGCAGCAGGAGCAGGGCTCACC
ATTTTCCCCTGGCTCATCGCCGTTTAAAGCAGACTCGGAGTCACACGACT
CCTCTTTTGAGGCCAAACAGCAGGAGGCGCGCCTACGGGATCAGCGTCAG
TTGATCGACGTGCTCCGAAGGCAAAAGAAGATGCTTCTGGACGACATCCA
GAGGATCAGTCTGGAACACGATGAAAAACTTTCGCAGTTGCAGCAAACTG
TTGTCGGCATGGAGCTGGAGAGCAAGCACGTGACTGGAAAATGCAAGCAA
CTACTTGACCTTAAAAGTCAAATGGAGCACCAGCTAGAGCTAAGAAGCAC
TACCCTACGCAGTGTCACCGCGGAGCGTGATCAGCTGCGCCAAGTCATTG
CTGAGCTTAACGAGACGCTGCAAACGCAGGAGCATCTGTTAGCGCTAAAG
GACAGGAGTTCCTGGATTTGAAACAGTACTACCAACAAAGCTGAAACGGA
AAGTAGCATGGAAATTATGCACTCTATAGCATGAAATTTCACGAAGAGAT
CAACGAAAACGAGTGAAATTGCCAGCTTAAGATTCTCTTAACGAGCTTCA
GCCGAGCTGATGCTGATGTCTCACATGAAAGACCATGCCAGGAACAGCAG
CGTCACCTTGACCCACTGGAGTCCCATGCAGGCCCAACCTTGGAAGGAAC
CCTCACTCCGCAGGCATGGCTCCTAACTGGAGCAGGGTGAAAATTACAAT
TCTTGGCCTTCGTACACCCTAAATACGGAGGCTAAAGAAATTTGGGGGAG
GCCAAAACCTTGAATTCAGCGCGAAGGTTGACCTCTCTACAACACGGCAT
AGTCCGAAAATGTGGGCT
FMO03182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2998 | CG11248-RC | 191..1344 | 36..1164 | 4620 | 94.8 | Plus |
| CG11248-RA | 2989 | CG11248-RA | 182..1335 | 36..1164 | 4620 | 94.8 | Plus |
| CG11248-RB | 2918 | CG11248-RB | 111..1264 | 36..1164 | 4620 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21680307..21681303 | 36..1022 | 4370 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:03 has no hits.
FMO03182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:54 Download gff for
FMO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RA | 128..1214 | 36..1104 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:22 Download gff for
FMO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..1197 | 36..1104 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:20 Download gff for
FMO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..1197 | 36..1104 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:20 Download gff for
FMO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21680296..21681309 | 27..1027 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:22 Download gff for
FMO03182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21673396..21674409 | 27..1027 | 97 | == | Plus |
