FMO03183.5prime Sequence
1201 bp (1026 high quality bases) assembled on 2008-07-07
> FMO03183.5prime
TCGTATAGCATACCAAATACGAAGTTATCAGTCGACATGAACGATGAAGA
TTTCTCCCGTGGCGATGTTAGAGACTTGTCGGATATACCCGAAGCGGATC
AATTTTCCGCCTCCTTGAAATGCAGCTGCGTGCGTCTGGTGCCCTACAGA
TTCGAGATTACCGAGCCGGTATGCTTCACCACGAAGGGCGTTCGCATTGC
TGGCATCCTGAAGGACAAGGACGAGAAGTTCGAGCTGAACATCCACAAAC
AGGAGGTGATCAAGGTGATAGCCCACTTCGGCAACGTTGAGCCCGCCCAG
CCACTGGTCACGCTATATCTCCTCAAGACGTGTGCCGAATACGTAAAGAA
CCAGCTCAAGCTGCCCGACGATCAGCATCACGAACATACCGGCTTCAAGA
CGCACAGCTATCACACTCGCCGTCTGATCCTGTTGTTCGACAGCATATCC
GTGTCCGCCCGTGGTAATATCAAGTCTATGTTCAGTTGTGTAGACGAGAT
ATCCTCGACAGATGCCGCCGAGATTCTCGAGAGGATCGCGGACTCCGATC
GCAAGACGCAGGACAAGAGCTCGCAGCCACCGCCTCGCCAACTGAGAGCA
GACGAGCAGGTTAGTCTGCTGATGTATCCGCCGAAGGGAACGGGTGGCCT
GTGCATACGCATGGAGGACTTCGTCTGCCTCACAAAGGAGTCCTACCTCA
ACGACATCATCATTGACTTCTATCTGCTCTGGCTGAGGAACACGCTGATT
CCGGAGCCTCAACGCGAAAGAACGCATATCTTCAGCACATTCTTTTACAA
GAGACTCACAACGCTAACGCGGCCAGCGGACATGAAGCAGACGGGCAGCA
CAGAAGCGACACGCCAGGGTGCAAAAGTGGACCAAGGGTGTGGACATCTT
CGATAAGATTTCATTATAGTGCCCATCAATGAGCAGTCGCATTGGTTTCT
CGCCATCATTTGCTACCCGAACTTAAAAGGACCCGTCACGTTCGATACGA
ACCAGCCTGTACAGCCGCAGCAGTGAAGCGTCTTCGAGCAGAAGTGGTCT
TGCAATGTAACCCCACCATACTCCGCTGACGAAAAGGCCAAGAAGACAGC
TTCCACGTCTGACGCAGAACTGTGTCGATTCCGAACAATGAAAGCAGATA
GCCAAGCCATGAGCCTTGCCGAGAATAGTAACTCGAAATTCGCCCAGGGT
A
FMO03183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| velo-RD | 2490 | CG10107-RD | 142..1221 | 37..1105 | 4950 | 97.9 | Plus |
| velo-RB | 2691 | CG10107-RB | 343..1422 | 37..1105 | 4950 | 97.9 | Plus |
| velo-RC | 6333 | CG10107-RC | 3995..5064 | 47..1105 | 4900 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6745849..6746487 | 1024..386 | 3070 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6746562..6746779 | 385..168 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 6746868..6746991 | 171..48 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:14 has no hits.
FMO03183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 14:59:43 Download gff for
FMO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10107-RB | 192..1271 | 37..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:27 Download gff for
FMO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| velo-RB | 192..1271 | 37..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:19 Download gff for
FMO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| velo-RB | 343..1422 | 37..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:19 Download gff for
FMO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6746562..6746778 | 169..385 | 100 | <- | Minus |
| 3L | 6746871..6746991 | 48..168 | 100 | == | Minus |
| 3L | 6745757..6746487 | 386..1105 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:27 Download gff for
FMO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6738857..6739587 | 386..1105 | 96 | <- | Minus |
| arm_3L | 6739662..6739878 | 169..385 | 100 | <- | Minus |
| arm_3L | 6739971..6740091 | 48..168 | 100 | == | Minus |
