FMO03184.5prime Sequence
897 bp (261 high quality bases) assembled on 2008-07-07
> FMO03184.5prime
GTATAGCACACAAGAAACGAAGTTATCAATCGACATGGCCACCAAAAGCC
AGCCGGCGGAGGCTCAACAATTGTACCCGCAGCCCAACAGAGTGGAACTG
CTCTCGGCGCAGACGGATCCCAGCCAGAAACCGCGATGGGGCAACCTCCT
GCTGCTGGTGGCCCTGGCAACCACATTTGGCGGCGCCGTTTCCACCGGCT
ACTGCATAGGCGTTATCAACGCCCCCTCGAAGCTGATGAAAGTTTGGTGT
AATCAGACCCTGCACGACACCTACGGGAGTAACCTCAGCGCAGGCGGTCT
ATATCTCTTGTGGTCGTGCGTCGTTTCTGTGTTCCTGGTCGGAGGCTCCT
TCGGTTCGCTGGGCGGAGCTGGAGCAGCCAATAAATTTGGCAGGAAAGCA
TGCTTTCTTATCTGCGGCGCCCTGTTCACCGTGGGAGCGGTGCTATTCTT
CTTCTGCCGAGCAGCCTTCTCCGTGGAGATGCTGGTGATCAGAAGGTTTG
TTGTGGGCCTTGCCTCCGGCCTCGTGACCGCCACCCTGCCCATGTACTTG
TCCGAGGTGGCTCCATGGCTCTGCGCGGCACTCTGGGAGTCTTCATTGCC
GTGGGCGTGACGGGGGGCGTGGTAGTGGGGCAGGTCTGCACTTTGGCAAT
GTCTTCCGTACTGAGGATCTCTGGCACTACGCCCTGACTGCCTACATGTT
CCTTATCCTGTCTGCTACCTGCCATCATACCTCTTTCCCGACAGTCCCAA
ATTCCTGTATATTGTTAAGGAAATCGCGCATCTGCCAAGCGGGAGCTTCA
ACGGCTGCGGGGCAAGGATGCGAGGAACTTATCGCCCAAGAATGTCCGAG
ATTGAGCAAATCTTAATGCCAAGGTGCAAACACCACTTTTGCGATTG
FMO03184.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut1-RA | 2412 | CG8714-RA | 318..1187 | 35..895 | 3825 | 96.8 | Plus |
| slv-RC | 1247 | CG8717-RC | 1..65 | 99..35 | 325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8085044..8085500 | 391..842 | 1900 | 96.9 | Plus |
| 2R | 25286936 | 2R | 8084690..8084853 | 231..394 | 775 | 98.2 | Plus |
| 2R | 25286936 | 2R | 8084528..8084639 | 125..236 | 545 | 99.1 | Plus |
| 2R | 25286936 | 2R | 8083293..8083385 | 35..127 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:59:13 has no hits.
FMO03184.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:07 Download gff for
FMO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut1-RA | 309..1186 | 27..897 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:42 Download gff for
FMO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut1-RA | 311..1188 | 27..897 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:19 Download gff for
FMO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut1-RA | 311..1188 | 27..897 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:19 Download gff for
FMO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8083284..8083385 | 23..127 | 93 | -> | Plus |
| 2R | 8084531..8084635 | 128..232 | 100 | -> | Plus |
| 2R | 8084692..8084852 | 233..393 | 98 | -> | Plus |
| 2R | 8085047..8085558 | 394..897 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:42 Download gff for
FMO03184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3970789..3970890 | 23..127 | 93 | -> | Plus |
| arm_2R | 3972036..3972140 | 128..232 | 100 | -> | Plus |
| arm_2R | 3972197..3972357 | 233..393 | 98 | -> | Plus |
| arm_2R | 3972552..3973063 | 394..897 | 94 | | Plus |
