Clone FMO03194 Report

Search the DGRC for FMO03194

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:31
Well:94
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPtp61F-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03194.5prime Sequence

168 bp (13 high quality bases) assembled on 2008-07-07

> FMO03194.5prime
CGGGAGGCGAAGGAGAAGCAGTCTGCACCTCGGAATCGGAACGTCAACGA
ACCGCGGCCTGTATCCCTATCGGGATGTGAATCCGTACGATCATTCCCGC
ATTGTTTTGAAGCGCGGCAGCGTAGACTACATCAATGCGAACCTGGTTTA
GCTGGAGCGCGCCGAGCG

FMO03194.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ptp61F-RE 5167 CG9181-RE 2038..2207 1..168 725 95.9 Plus
Ptp61F-RD 3495 CG9181-RD 366..535 1..168 725 95.9 Plus
Ptp61F-RA 2115 CG9181-RA 250..419 1..168 725 95.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1346273..1346429 155..1 595 94.9 Minus
Blast to na_te.dros performed on 2014-11-28 22:47:01 has no hits.

FMO03194.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:22 Download gff for FMO03194.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptp61F-RA 316..485 1..168 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:26 Download gff for FMO03194.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptp61F-RA 250..419 1..168 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:51 Download gff for FMO03194.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptp61F-RA 250..419 1..168 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:51 Download gff for FMO03194.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1346189..1346205 152..168 100 <- Minus
3L 1346277..1346429 1..151 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:26 Download gff for FMO03194.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1346189..1346205 152..168 100 <- Minus
arm_3L 1346277..1346429 1..151 95   Minus