FMO03196.5prime Sequence
1105 bp (897 high quality bases) assembled on 2008-07-07
> FMO03196.5prime
CGTATAGCATACAAAATACGAAGTTATCAGTCGACATGGACACCCGCGTG
GAACTGGAACTGGAGCCGGTTGGCAAACAGGATAGGCTAAAGGATCAGCC
GGATGATGAGAATGAACCGCTGGAAAACCAGCTGGAGCTGGAGCAAGAGC
ACAAGAGCCTGCTCACGCCGGTCAAGATTCCCCCGGCTCAGACCGCAAGT
CCCGACCAGGAGGCCACGCCCAGCACCCCACCACCCATGAGCCTGCAGCC
GGGAACATCTCGGCAGTTGTTCAGGGATGCCGCTATGGCGCACGGAGGCC
AGGAGACCACATCGTTGCTGCAGCAGGAACTGAACAACATAGCCGCCACC
CAAACGCCGGCCTCGAAACTCAGAAGCGCAAGCTCCACGCTGGATGCCAG
TATATCCCGGAATCCCTCCACCACGGGCGGGAAGCACGAGAAGAAGCTGG
GCCACCGGCGAGTGGCGGAGGGCGGTGAGGTGACCTACAAGAAGATCCAA
TCCAAGCAAATCATGGGCTCCATTCAGCTGGGCATCCAGCATACGGTGGG
CAGCCTGGCCAGTAAGCCCAAGCGGGATCTGCTAATGAATGACTTCTGGG
AAATGGAAACGATTTCGTTTCCGCCAGATGGTTCCTCCATAACACCTGCC
CATCACTACAACGACTTCCGCTTCAAGGTCTACGCACCCATCGCCTTTCG
CTACTTCCGAGATCTGTTCGGAATCGCACCCGATGACTTCCTCATGTCCC
ATGTGTGCGTCTCCCCTGAAGGGAGCTTTCCAATCCGGGTGCCTCTGGGT
TCCATATTTTACCTGACGACCGACGACGAGTTCATTATCAGACGGTGCAG
AAGAAGGAATGCGATTCCTGCAAACCTTTTGCCGGTATTACATGAACCTA
TCGCAAATCCCTCGAACGCTGCTGCCTAGGTTCTTCGGACTATATGCTTC
ACTACAACTCGAAGAACGTGGCGTTGGGGCCATGAACAACCTGTTGCCTC
AAACATTAAGATGCACTGCAGTCGAACCTTAGGAATCTTCCTTCCGACGA
AGCTTCCAAGCAAGCGAAAAGGCAAGTCCCCGTTCAAGGACTTGAACTTG
CTGAG
FMO03196.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sktl-RC | 2939 | CG9985-RC | 383..1468 | 36..1105 | 4650 | 96.6 | Plus |
| sktl-RB | 3215 | CG9985-RB | 659..1744 | 36..1105 | 4650 | 96.6 | Plus |
| sktl-RA | 3747 | CG9985-RA | 659..1744 | 36..1105 | 4650 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20829380..20830370 | 1020..36 | 4270 | 97.9 | Minus |
| 2R | 25286936 | 2R | 22875894..22876085 | 545..736 | 315 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:42:13 has no hits.
FMO03196.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:58 Download gff for
FMO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 649..1698 | 29..1067 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:20 Download gff for
FMO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 653..1702 | 29..1067 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:50 Download gff for
FMO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 653..1702 | 29..1067 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:50 Download gff for
FMO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20829327..20830374 | 33..1067 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:20 Download gff for
FMO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16716832..16717879 | 33..1067 | 97 | <- | Minus |
