FMO03202.5prime Sequence
591 bp (591 high quality bases) assembled on 2008-07-09
> FMO03202.5prime
AAGGGGGTTATCAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCG
TGATAGCTGCCAGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCAT
GGCATCAATGGTTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGAT
TGGTAAGGCGGAGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGG
CGTTGGAAGGTCGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACG
CTGCAGAATCCTAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCAT
CGATGGTTCTTTTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACG
GTTGGAACTCGAACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCT
TGGTTCCAGTACGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGG
ACGTTCCTTGGAATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAA
AGAAAGTAGCCGCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGC
TTGGACACTCTGGAAATTGTGGGCTTCAGTTTGGGCGCCCA
FMO03202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6296-RA | 2127 | CG6296-RA | 13..584 | 20..591 | 2860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27005087..27005364 | 336..59 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 27004779..27005036 | 591..334 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 27005418..27005457 | 59..20 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:59 has no hits.
FMO03202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:28 Download gff for
FMO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6296-RA | 2..583 | 11..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:37 Download gff for
FMO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6296-RA | 2..583 | 11..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:08 Download gff for
FMO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6296-RA | 2..583 | 11..590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:08 Download gff for
FMO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27005087..27005363 | 60..336 | 100 | <- | Minus |
| 3R | 27005418..27005463 | 11..59 | 91 | | Minus |
| 3R | 27004780..27005033 | 337..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:37 Download gff for
FMO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22830502..22830755 | 337..590 | 100 | <- | Minus |
| arm_3R | 22830809..22831085 | 60..336 | 100 | <- | Minus |
| arm_3R | 22831140..22831185 | 11..59 | 91 | | Minus |
