FMO03204.5prime Sequence
1212 bp (1015 high quality bases) assembled on 2008-07-09
> FMO03204.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCGACATGGCAGCGGACTGGC
GATTGATGCTCCTGCTGGGAATCCTGCTCCTTGTGGGTGGTCCTGCTAAC
GGAGAGGTGTACACGGCCTTGGCCGAGATGGAGGAACTTCTGGAGACTGA
ATCCGTACTGATTACCAACTTGGAGGGCTACATACGCGTCCAGGAGGACA
AGCTGAACTTTCTCAAGAACAAAATGGACGAGTACCAGAGGGAGCACTCG
GATGCCTCCCATGATATAACCGCCTATGTATCCAATCCAATCAATGCGTA
CCTGCTGACTAAGCGGCTAACCACCGATTGGCGGCAGGTGGAGAACCTCA
TGGAGCACGACGTGGGCACGGATTTCTTGCAGAACATCACCCAGTATCGC
AGTCTCCTGAAGTTCCCCTCCGACGAGGACCTCAATGGCGCGGCGGTGGC
CTTGCTCCGCCTGCAGGACACCTACCAACTGGACACTTCGAGTGTGGCGA
GGGGCAAGCTGAATGGCATTCAGTACAGCACGGAAATGTCCTCGGATGAC
TGCTTCGAGTTGGGTAGACAATCGTACGTGAACCACGACTACTACCACAC
GGTGCTCTGGATGAACGAGGCGATGGCCCCGCATGCTGGGAGGAGCCGAC
CAACCACACCCAGAGCTTCACCAAGGCTGACATCCTCGAGTACCTGGCCT
TCTCCACCTACAAGGAGGGCAACATAGAGAGCGCGCTGACAATGACCAAC
GAGCTGCTCCAACTGCTGCCCCACCACGAGAGAGCCCATGGAAACAAGCG
GTTCTACGAGAAGGAGATTGCCCAGCAGCTGCAATTGCGGAAAATGAAGG
GCGACGATGGCACGATGAAATGCCCAAGTCCCGATTTGCCCGTGGCCAAG
AGTGACCCGGCCATCTTTTGAATATGACAGATCGAAAGGGCTTACGAAGA
TGTTGGGGCAGAGGCGAACTGAACCCATCGCCATCGGATTTGGCGATCCC
TTGCCGATGCCCGCTATGTTCCACCAACAGAAGTACCCTTCCTGGCGCGT
CTTGGTTCCCTTGAAATTTGGAAAGAGAGGTTCACACGGCGGGATTCCGG
ATACATTTGTATTTTCTATACCACCGAATGTCCATGGATACCAAAAGGCT
AAGAATCCGAATCTGATATCCAAGCGCGGAATGGTCCCGCGCCCCCCCGA
ATTCCCGCCCAG
FMO03204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaEFB-RA | 2248 | CG31022-RA | 336..1351 | 35..1068 | 4405 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30479119..30479427 | 220..528 | 1485 | 98.7 | Plus |
| 3R | 32079331 | 3R | 30474044..30474228 | 35..219 | 880 | 98.4 | Plus |
| 3R | 32079331 | 3R | 30479590..30479781 | 526..719 | 855 | 98.5 | Plus |
| 3R | 32079331 | 3R | 30483892..30484056 | 718..881 | 745 | 98.2 | Plus |
| 3R | 32079331 | 3R | 30484119..30484215 | 888..989 | 205 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:24 has no hits.
FMO03204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:14 Download gff for
FMO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 329..1317 | 30..1031 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:28 Download gff for
FMO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 331..1319 | 30..1031 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:35 Download gff for
FMO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaEFB-RA | 331..1319 | 30..1031 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:35 Download gff for
FMO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30474036..30474228 | 28..219 | 96 | -> | Plus |
| 3R | 30479119..30479427 | 220..528 | 98 | -> | Plus |
| 3R | 30479593..30479780 | 529..718 | 98 | -> | Plus |
| 3R | 30483893..30484062 | 719..888 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:28 Download gff for
FMO03204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26299758..26299950 | 28..219 | 96 | -> | Plus |
| arm_3R | 26304841..26305149 | 220..528 | 98 | -> | Plus |
| arm_3R | 26305315..26305502 | 529..718 | 98 | -> | Plus |
| arm_3R | 26309615..26309784 | 719..888 | 97 | -> | Plus |
