FMO03205.5prime Sequence
1239 bp (898 high quality bases) assembled on 2008-07-09
> FMO03205.5prime
GTATAGCATAATAATACAAAGTTATCAGTCGACATGACTAACACGGATCT
GAAAGCCTTGGAACTTATGTTCCAGCGACCCCTGGAACCGGCATTCACCA
CTCGTGACTCCGGAAAAACTGTATTGGAACTGCCCGATTCCTTCTATACG
GATCGCTATCGCAATGACACCGAGGAGGTGGGCAATCGATTCTCTAAGGA
CGTGGATCTGAAGATCCCAATTCAGGAGTTGAGCAACGTTCCCAGTCTGG
AGTTCACCAAAAAGATTGGTCTCAAGAATCAATTTTCGCTGTTTAACAAT
CGCCATCGTGAGATCGCCAGCGAGCTGATCACCCTCTTCATGAGCGCACC
AAATCTCAGACAATTCGTGTCGCTTTCCGTTTACACCAAGGATCGTGTGA
ATCCTGTGTTGTTCCAATACGCCTATGCCGTCGCCGTTGCCCATCGCCCG
GATACGCGTGAAGTGCCCATTACCAACATTTCCCAGATCTTTCCGAGCAA
CTTTGTAGAACCTTCCGCCTTCCGGGATGCCCGTCAGGAAGCTTCTGTTA
TTGGAGAGAGCGGCGCTCGTGTCCATGTGGACATTCCGCAAAACTACACG
GCCTCGGATCGCGAGGATGAACAGCGCCTGGCGTACTTCCGTGAGGACAT
CGGTGTTAATAGCCATCATTGGCACTGGCACTTGGTCTACCCGACCACCG
GACCCACGGAGGTGGTCAACAAGGATCGTCGTGGCGAGCTCTTCTACTAC
ATGCACCACCAGATACTCGCGCGCTAAATGTGGAGCGCTTTCTGCACAAT
CTGAAGATGTTCAGCCGCTGAACAATCTGCGTGTGGAGGTTCCCGAGGGC
TACTTCCCCTAGATCCTGTCCAGCACGAATAACCGCACCTATCCCGCCCG
AGTTGACCAACCAAAAGCTGAGGGACGTGACCGCCATGATGGGGCGTGTG
GAGATCTCGTTGTGAAGCCCTGGCCGTGATCGCGTGCTGCTTGCCATAGA
TCAAGAATCGGTTGAAGATTCTTCTGGCATCGGATACCATTGGACGGAGT
CGTGTGCCATTCGATATTCCTGGGGCAACATGATTGAGGCATCGCCAGTC
TTATCCATTAACTTAATTTCTATGGCATTCTACCACACGAGGGTCACACC
ATATCTCCCTTTGCTCCAGATTCGAATACCGTCATGGAGATCCGGGTGGT
ATGGGCCAAGTGTACACGGCCATGAAGGATGTACTCAAA
FMO03205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO1-RA | 2338 | CG42639-RA | 73..1273 | 33..1230 | 4960 | 95.4 | Plus |
| PPO2-RA | 2280 | CG8193-RA | 767..835 | 720..787 | 230 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17888788..17889283 | 1019..525 | 1920 | 95.6 | Minus |
| 2R | 25286936 | 2R | 17889544..17889901 | 390..33 | 1790 | 100 | Minus |
| 2R | 25286936 | 2R | 17889351..17889487 | 526..390 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 17888582..17888663 | 1153..1073 | 240 | 89 | Minus |
| 2R | 25286936 | 2R | 9043887..9043943 | 776..720 | 210 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:16 has no hits.
FMO03205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:51 Download gff for
FMO03205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bc-RA | 72..1191 | 33..1153 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:04 Download gff for
FMO03205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO-A1-RA | 73..1192 | 33..1153 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:41 Download gff for
FMO03205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO1-RA | 73..1192 | 33..1153 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:41 Download gff for
FMO03205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17888788..17889282 | 526..1019 | 96 | <- | Minus |
| 2R | 17889352..17889487 | 390..525 | 100 | <- | Minus |
| 2R | 17889545..17889901 | 33..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:04 Download gff for
FMO03205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13776293..13776787 | 526..1019 | 96 | <- | Minus |
| arm_2R | 13776857..13776992 | 390..525 | 100 | <- | Minus |
| arm_2R | 13777050..13777406 | 33..389 | 100 | | Minus |
