FMO03207.5prime Sequence
1222 bp (979 high quality bases) assembled on 2008-07-09
> FMO03207.5prime
TCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGAAGTGGTTTCTC
TTGTTCGTTCTGGCTATTGGCCTGGATTTATCTGTGGCCAACTCGATTTC
TAGGTATAACCACTACCGACTGCCAACTGCCTTAAGACCCCAAAGGTATT
ACTTACGTATCCTGACACTTTTGGAAAGTCCTGATGATCTCCGTTTCGCT
GGAAATGTGCAAATCGTGATTAAAGCACTGCAAAATACCAGGAACATAAC
GCTGCACTCGAAGAACCTGACCATCGATGAGTCCCGGATCACGCTGCGCC
AAATTAGTGGAGCGGGAAATATGGATAATTGTGTATCCTCCACATCCGTT
AATCCCACCCACGACTATTACATCTTTCACACCTGCAAGGAACTTTTGGC
CGGCAATGTATACAAACTGTTCCTTCCATTCTCGGCTGATCTAACACCTC
AACTTTTTGGTTACTACCGCAGTTCGTACAAGGATCCTGTGACCAACAAG
ACACGCTGGCTGTCTGCGACGCAATTCGAACCATCCTCCGCTCGAAAGGC
ATTTCCCTGCTTCGATGAACCCGGTTTTAAGGCATCCTTCGTGGTCACTT
TGGGCTATCACAAGCAGTTCAATGCACTGAGCAATATGCCCGTAAGGGAA
ATCAGGCCACACGAGTCCCTTGCAAACTACATATGGTGCGAGTTCCAGGA
GTCGGTGCCAATGTCCACCTATCTGGTGGCATATTCGGTTAATGATTTCT
CCTTTAAACCCTCCACTCTGCCAAATGGAGCTCTATTCCGGACTTGGGCC
AGACCCCATGCCATAGATCAGTGCGATTATGCCGCGGAGTTTGGACCCAA
GTGCTGCAATACTATGAGGAGTTCTTCGGCATTAGTATCCGCTTCCCAAG
ATCGATCAGATGGCTGTTCCGGATTTCAGCGCTGGTGCCATGGAGACTGG
GGTCTGGTCAATACAGAGAATCCACACTTCTCTACTCGCACCCACTCATC
ACTGGCGGATAAACAGGATCTGGCCAATGTATAAGCTCATGAATTGCCCA
CAATGGTTCGTAACTCTGGGGTGACAATGAATGGTTGAACGACCTCTGGC
TAACCGAGGGATCCCCACAATGGTGCCGCTTGGGAATAGCACTTTACCGG
AATGAACTCAAGCTAAGGGTTCGGTAACGCCTCGATGAACCGCCTTCCCC
GTGAACTTCTAGGTTATCACTA
FMO03207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-RB | 3171 | CG31445-RB | 197..1306 | 36..1135 | 5020 | 97.6 | Plus |
| CG31445-RA | 3033 | CG31445-RA | 59..1168 | 36..1135 | 5020 | 97.6 | Plus |
| SP1029-RE | 2981 | CG11956-RE | 246..1152 | 213..1112 | 1295 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29243369..29243842 | 509..36 | 2355 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29242637..29243094 | 1112..662 | 1660 | 94.8 | Minus |
| 3R | 32079331 | 3R | 29243158..29243314 | 661..505 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 29247342..29247627 | 958..676 | 740 | 86.4 | Minus |
| 3R | 32079331 | 3R | 29237084..29237353 | 958..692 | 540 | 82.6 | Minus |
| 3R | 32079331 | 3R | 29247931..29248214 | 496..213 | 430 | 76.8 | Minus |
| 3R | 32079331 | 3R | 29237447..29237568 | 661..540 | 235 | 79.5 | Minus |
| 3R | 32079331 | 3R | 29239267..29239335 | 746..678 | 195 | 85.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:41 has no hits.
FMO03207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:45 Download gff for
FMO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..1160 | 31..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:37 Download gff for
FMO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..1160 | 31..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:34 Download gff for
FMO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..1160 | 31..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:34 Download gff for
FMO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29242619..29243094 | 662..1128 | 94 | <- | Minus |
| 3R | 29243158..29243313 | 506..661 | 100 | <- | Minus |
| 3R | 29243373..29243850 | 23..505 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:37 Download gff for
FMO03207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25068341..25068816 | 662..1128 | 94 | <- | Minus |
| arm_3R | 25068880..25069035 | 506..661 | 100 | <- | Minus |
| arm_3R | 25069095..25069572 | 23..505 | 98 | <- | Minus |
