Clone FMO03208 Report

Search the DGRC for FMO03208

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:32
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7227-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03208.5prime Sequence

501 bp (473 high quality bases) assembled on 2008-07-09

> FMO03208.5prime
GTATAGCATACATAAAAAAGAACTTATCAGTCGACATGATTGGAAAACAG
CGCCTTTGGCAGACAAGTGTGTTGGGTCTGCTTTTGGCCAGCTTCAGTCT
GTTCTCCGTGCTCTATATGGAGCAAATCGAACGCTGGATGCTGGAGTGGT
TCATGGTGCTCCGCCCAGGAACAATGATCAGCAGCCTGTGGCAGTCACCG
GCCATGGACATAAACGTTGACCTGTACATATTCAACTGGACGAACTCGGA
GAAGTTCAGTGATCCCACAGTGAAGCCCAGGTTCGAGGAGCTTGGTCCGT
ATCGCTTCACCGAACGGATGCAGAAGGTCAATGTGGAGTGGCACGATGAG
AACTCGACGGTTTCCTATCGACGTCGCAGTCGATTCGATTTCGATCCGAA
ACTTAATGTCGGACGTCCTACAGATCCCATTGTGGCGCCCAACCTGCTCA
TTGTGGGACTGTACCAGAAGATGGTCATGTGGAGTCCCATGCTGCGTTCC
C

FMO03208.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7227-RC 2578 CG7227-RC 402..868 35..501 2305 99.6 Plus
CG7227-RB 2128 CG7227-RB 402..868 35..501 2305 99.6 Plus
CG7227-RA 2270 CG7227-RA 544..1010 35..501 2305 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7996287..7996753 501..35 2305 99.6 Minus
Blast to na_te.dros performed on 2014-11-28 20:27:49 has no hits.

FMO03208.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:52 Download gff for FMO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7227-RA 505..998 1..501 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:25 Download gff for FMO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7227-RA 517..1010 1..501 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:13 Download gff for FMO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7227-RA 517..1010 1..501 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:13 Download gff for FMO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7996287..7996756 34..501 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:25 Download gff for FMO03208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7996287..7996756 34..501 99 -> Minus