FMO03209.5prime Sequence
418 bp (210 high quality bases) assembled on 2008-07-09
> FMO03209.5prime
GTATAGCATAAAAGGCAAAGTTATCAGTCGACATGGCCGACAAGAAGAAT
CTCCACCTGCGTTTCGACCATCCCACCGAGCCAGTGTTCATGGACAAGGG
CAAAAGGGTGACCGTGTTCGATGTGCTCCACTCCTTCCTGACCGACCGCT
ACCGACCCATCAGCAACGAGGTGCATAGCCGCGTCGGCGACAAGGTGGAG
CATCGCGTTCCAGTCCGGGAGATCTCCATTCCCGATCTGCCGATCCCCAT
GTCCCTGGGTCGGGACGAGCAGTTCTCGCTGTTCCTGCCCGATCACCGCA
GGATCGCCGGCCGCCTGATCGATATATTCATGAACATGCGCTCCGTGTAC
GACTTGTTTTTTTGTGGCGGTGTACGCCAGGGATCGGGTTAAACCGGGGC
TCTTCAATACCCCTTGTC
FMO03209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPO2-RA | 2280 | CG8193-RA | 90..475 | 33..418 | 1540 | 93.5 | Plus |
| PPO3-RA | 2228 | CG42640-RA | 61..446 | 33..418 | 325 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9044247..9044620 | 407..33 | 1495 | 93.9 | Minus |
| 2R | 25286936 | 2R | 23064829..23065202 | 33..407 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:40:36 has no hits.
FMO03209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:53 Download gff for
FMO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8193-RA | 81..474 | 25..418 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:19 Download gff for
FMO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| proPO45-RA | 82..475 | 25..418 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:05 Download gff for
FMO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPO2-RA | 82..475 | 25..418 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:05 Download gff for
FMO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9044235..9044628 | 25..418 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:19 Download gff for
FMO03209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4931740..4932133 | 25..418 | 92 | | Minus |
