FMO03210.5prime Sequence
1253 bp (929 high quality bases) assembled on 2008-07-09
> FMO03210.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGCACCAGGCCTACA
GTGTTCACTCGATCCTGAAACAGGGCGTGCAGATAGAGTCAATTGCGGCA
TATGGCAACCATGTCATCTTGGGCACCCGCAGCGGACAGCTGATCATGTA
CTCTGTGGACGAGGAGACGGGCGTGGACATGCGGATGTTCAACAAGAACT
TCAGCCGGAAACCGATCACCCAAATGGAAGTGATTGCCTCGGAGAACCTG
CTCTTCGTACTCACCGACTTACAGGTGCAGGTGTGCGACATTCGGCGGAT
TGAGAGCAACTTCGCTTTCATGCACAGTGCGCCCGACACGAAGGGATGCA
CCCTGTTCACCATGGACGTGGACACGCCGAAGTCCACAACCGGACGTGTG
GCCACCGTCATACGGGTGTGCTGCGCTATCCGGCGGCGTCTTGTGTTCTT
CTTTTGGAAGGAGGACAAGCTTAATTCCCTGGAATTGATCATCGAGCTCA
GCGATGTGCCCAGGACACTGTGCTGGGTGGGCCATGCTGTCTGCGTGGGC
TTCAAAGACGAATATGTTGTTTACGATATATCAGGAAAAGCACCAAAGAA
GCACAACCTCTTCCTTACCTCCTCTAGTATCAGCAGAGATCCCTGCATTT
GCCTTATCCGGAACAACATGTTGGGCATCTCTAAGGACAGCTACCTCGTC
GTAGTAGATCCGAGTCAGTACAAAGAATCGGATGGAATCAATAACTCAAC
AGATGTCCGGCCAGCTGCCATGGACAGCAATAGTTCCCTAACTCCTCTGC
TCTGGTCAAGTCCGCTTTTAGATCTGGTCTGGGATGAGCCATTCGCTGTG
GGGCCGTGTCAACAACGCCATCGAAGTGCGCAGCCTAGTTGGCAAGGACA
CCCTGGTCCAGAACCAATTCCGGAGCTACAGAAGACGAAATTTCCTGGTT
TACGCGACAAGGAAACAATCTTTGCCCGCCGCCACCTCCGAGCTTTGGTG
CATTCGAATGGTGAATATCCCTAATCCAGCGTCAGCAGTTGCTACAGCAA
AAAAATTTCAAACTGGCCTATTGAAGCTGACGCAAATCTCGAATGAACCT
TGCCGCGAACCCAGTCCAAACCATCGCCCAAATACCAATTGCTCTTATGC
AAAGACTGGTTTACCAATAGGATTCTCGCGGCCATGAGGATTGAAAGCGC
TATAAATCCTACCAATTGATAAAACTGTTTCCAACACTGTGGTGTGCCCA
ACA
FMO03210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps39-RA | 2915 | CG7146-RA | 94..1294 | 35..1234 | 5025 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18273759..18274232 | 577..104 | 2370 | 100 | Minus |
| 3R | 32079331 | 3R | 18273448..18273697 | 827..578 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 18273155..18273390 | 1067..827 | 700 | 91.7 | Minus |
| 3R | 32079331 | 3R | 18274283..18274353 | 105..35 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:01 has no hits.
FMO03210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:23 Download gff for
FMO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 94..1165 | 35..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:22 Download gff for
FMO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 94..1165 | 35..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:33 Download gff for
FMO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps39-RA | 94..1165 | 35..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:33 Download gff for
FMO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18273448..18273697 | 578..827 | 100 | <- | Minus |
| 3R | 18273142..18273389 | 828..1082 | 91 | <- | Minus |
| 3R | 18273759..18274231 | 105..577 | 100 | <- | Minus |
| 3R | 18274284..18274353 | 35..104 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:22 Download gff for
FMO03210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14099170..14099419 | 578..827 | 100 | <- | Minus |
| arm_3R | 14098864..14099111 | 828..1082 | 91 | <- | Minus |
| arm_3R | 14099481..14099953 | 105..577 | 100 | <- | Minus |
| arm_3R | 14100006..14100075 | 35..104 | 100 | <- | Minus |
