FMO03211.5prime Sequence
1240 bp (1000 high quality bases) assembled on 2008-07-09
> FMO03211.5prime
TTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGTGCCACCGCA
TCAAGCAGGACTACAGTGGCAACAGCTACCTGGGCCTCCACTTGGGCACC
CAACTCTTCCGCGCCCTGATCCTCGACTCCAAATTGAACGTTACCTATGT
GGCGCAGATCCGCTATGACGTTGATCTCCCAGAGTTCAAGACAACGAATG
GAATACTATCAGATGGCGGTCCTGGCGAGTTCCTGGCCAATCCGGTAATG
TGGGTAAAGGCACTGGACATGCTGATGGACTGTTTAGTGAAACAGGGAGC
GGATATGCACACGGTGGTCTCTATTGCCGGAGCTGCTCAGCAGCACGGTT
GCGTCTTCTGGTCGGAGTTGGGCTTGAGGCGTCTATGCAATTTGAACGTT
AACCTGCGGCTCCACGAGCAGATCACGGAGAGCGCCTTCGAATTGACCAG
AACGCCTACTTGGCGGGATAGCTCGACGGACGTGCAGGTCCGTGAAATGG
AGCACACCGTCGGGGGTCCCGCTGAACTGTCGAAAATAACGGGCTCCAGA
GCGTACACCAGATTCACGGGTCCCCAAATACGGAAAGTGTATACCCAGTG
CCCGGAGCAGTACGAGAGAACTTCCAGGATTTCGCTGATCAGCAGCTTTT
TGGCCTCTCTCCTTATCGGAGGCATTGCCTCCATAGACTACAGCGATGGC
TCGGGGATGAACCTGCTCGACATCCGGAAAAAGAAGTGGTCTGCAGCGTG
CCTAGACGCCTGTGCTCCTGACCTTGCCAGGCGTTTGATGAAGCCCATTC
CCTCGTCCCGGCTGCAAGGACGCATCGGGGACTACTACGTGAAACGCTGG
AACTTCAGGCGGACTGCATGGTGTCGCTTCCATCGGGAGCAAAGCCTTCG
GAACTGGCAAGGCTACTGGTAGAGATGACTTTCTCATGCTCAGTCTGGAT
ACAGTGATGTGTAGTGATGCCTTCTAAGAAAGCTCGCGGCTGGAGGACGG
CCACTGATGGTGCCATCCGACAAGAAGGACGAATCCTGGGCTCTCTATGC
CTCCAAACGGAGATTGACCCAAAAGCCTTTCTGTGAGATGTCCCCGGCGG
CATTGAAGTCACTTCTCAATTGCTAACGCCCAGCCATTGGCAACAATGCA
GGTACCGTGTCATTCCGGAACGGAAATATACACCAGTCAAGGCCAACTTG
TCCTGGAATGTCCCCACATTATACGCCCCTGAAGAGGAAC
FMO03211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3544-RB | 4359 | CG3544-RB | 86..1211 | 38..1148 | 4835 | 96.6 | Plus |
| CG3544-RA | 1823 | CG3544-RA | 86..1211 | 38..1148 | 4835 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 784421..785416 | 38..1028 | 4485 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:50 has no hits.
FMO03211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:47 Download gff for
FMO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..1105 | 38..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:14 Download gff for
FMO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..1105 | 38..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:36 Download gff for
FMO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3544-RA | 86..1105 | 38..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:36 Download gff for
FMO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 784417..785474 | 35..1082 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:14 Download gff for
FMO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 784417..785474 | 35..1082 | 97 | -> | Plus |
