FMO03212.5prime Sequence
1215 bp (965 high quality bases) assembled on 2008-07-09
> FMO03212.5prime
CGTATAGCATATTTAATACGAAGTTATCAGTCGACATGGATCAATTCTCG
CACGATCTGACGTTGGCTCTGGACCTGACGCTGATGGACAGGGCTAGTGG
CGGCGTCGGTAGGTGGGGCTCCCGCCGCAGGACACGTTCCACGGGCAATC
TGCCCTGCGCCCCTCAGCCCACGGAGGACTCCTCGAGCAGTCCCACGGAT
GCGCTAAACCAGGGGCACCATCACGGGCATCATGGCCACCACCACCATCA
CCACCACACAAGTGCCAACGTGGACGGACTGGACACACACAACCTTAAGT
TGCCAGCCAGCGACTCTGACGAAAAGGCGGAGGCGATGCTGCCTCTGCGT
CTGCCACTGACCTTGCCTATACGCATGGGTGCCCTGGAGTCCGACTCGCT
TAACGAGACCACCTTCAGTCCAGCCAGATTCTACAAGCCCAACTCGCGAA
GGAAACGCAAGATCAAACGGATGTCCATGGAGTTCGAGTTCAGCAAGGAT
ACATCACACACCTTCACCGAATCGCCACTGCAGCCCAGCCTGCTAAGTAG
CAGCGGTTCTGCTACTGGAACCATACGCAAGCGATTGTTGAAAATTGACG
CCACTGGACATCGCTCGCATTTGTTCTTCTGCGGCAAACGCAAGCGCTCA
AACCGTGATCGCTACCATGAGCAGGATTCGGTTAAGCTGTACGCCTTGCC
ACACTCACAAGTAGATGACCAGCACGTAGAGCAACCACAGCACCAGCAGC
AGAGGATGCGCCCCCGCAGCTACTCCTCCACATCGAAGCCACTCAGTGAC
CGCCTGCTTCCCACTGAACAAGGGACTGCTGTCGAAGATCAACCGAATGG
CTGCCCAGGGACAGCAGACTAAGCACACCCAAAGACTGAGACAAAGGACA
GGACTTGAAATTGTCATCGTTCTGAAGACCCGAAGGAGGAAGCTGGAGAT
GAAGGAACCTGCCCGATTCAAAAGGACGCGGTCCAAAGCTACCTTGGCCA
AGTGCTGATTTTACGACCGCCAATTAACTCCATCAGCATGACCACAATTG
TGCCCTGTGACCGATATGATGCCTTGATTATGAAGTACCCCACCAGCCTG
CTCCGCTGCTGCGCAAAATTGGTGCTAAGGTCAGGCTTCTGTAACACAGC
ACGATACATCAAACGAACGTCTCGCCGTCTTCTAAGCGATTCAAACGCTC
TCAGCGTTGCAGTCT
FMO03212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2664 | CG4281-RA | 151..1235 | 35..1118 | 4930 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2063797..2064491 | 1118..425 | 2630 | 96.3 | Minus |
| X | 23542271 | X | 2064547..2064820 | 427..154 | 1370 | 100 | Minus |
| X | 23542271 | X | 2064874..2064992 | 153..35 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:43 has no hits.
FMO03212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:26 Download gff for
FMO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 145..1238 | 35..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:09 Download gff for
FMO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 151..1244 | 35..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:28 Download gff for
FMO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 151..1244 | 35..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:28 Download gff for
FMO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2063787..2064488 | 428..1130 | 95 | <- | Minus |
| X | 2064547..2064820 | 154..427 | 100 | <- | Minus |
| X | 2064874..2065000 | 28..153 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:09 Download gff for
FMO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1957820..1958521 | 428..1130 | 95 | <- | Minus |
| arm_X | 1958580..1958853 | 154..427 | 100 | <- | Minus |
| arm_X | 1958907..1959033 | 28..153 | 96 | <- | Minus |
