FMO03215.5prime Sequence
1198 bp (885 high quality bases) assembled on 2008-07-09
> FMO03215.5prime
CGTATAGCATACATAAAACAAAGTTATCAGTCGACATGTCCAACTACGCA
CCCTTTATCAAGCCCTATGTGGAGTACAACGAGCACGGCTGGGGTCCTTG
CGAGGTACCCGAATTGGATGTGCCCTACCAGCCGTTCTGCAAAAGTGATC
GCCTGGGCAAGATCTGCGACTGGACTGCGATGGTGCCCGAGAAGAAGTTC
CCCAGTAAATACGCCTCGACCTTTGGCAACAACAGTCAGTACGCATACTT
CTACGAGGACGATGACTCCACCTTCCATTTGGTGGACACCACTGGATCGA
AGGCCACCAAGCCCTATCAGCGGGGACGCTATAGACCCAATATGCGCAAC
AATGTGAGGAGCAGGGGTCGCACGGGGCGTGGCACTCCGAATATAGCAAG
TCTCGGGGGATCCACGGCTGGAGGCGCAACTGCCAGTACCACCAAGTACG
GAAAGGGTCGCAATACACGCAACACGCAGAATATGGGTCGCAGATTCGGT
CGCAATGCTCCCACCAGAATCCGCGAGAGCTCAGTGATGGTGCAATCGGA
TTGGGTTTCGATCGAGGAGATTGATTTTCCACGCCTTCTCAAGCTGGCAC
TTCCCAATATTAAAGATGGTAAGGACATTGCCACCTGCGGATGGCTGGAA
TTTTATGATAAGTTATACGATCGAGTCAACTTACGCAATGAAAAACCATT
GCAAAAGATGGATCGTGTTGTGCACACCGTGACGACCACGGATGATCCGG
TTATTCGTCGTCTTTCGAGGACCATGGGCAATGTCTTTGCCACCGACGAA
TCTTGTCCACCATAAATGTGCTGCACACGCTCCATTACTCTTGGGATGTG
GTAGTCGAGAAATTGAGCACTAGGTGTTCTTAAATAGAGTATAATGATCA
ATTTGATTTGCTGACTGTCAACGAGAACTCAGTAGACCTTCGATGGATGA
AGAGGGTTCATCAATTTCGCACATAGCTGGCAATGAGGCCACTCTAATTA
ATCACAACCTTTAGCAGCAGTTCTTCGCATTGGCCCGAACAAGGCCAGGT
TTCATGTTTGGAGGAGACTCATCTCGTCAAGGATCCAGGCGGGACCTTGC
TCCATGCAATGGTACGTCAGGGGTTCTGCAACAGTGGGGTCGATGACTCC
GGTGCAGCCAATTGGGGTTATCCAAGGACACTAAGTGGGACACGTTGC
FMO03215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4810-RA | 2232 | CG4810-RA | 60..1138 | 36..1105 | 4670 | 96.6 | Plus |
| eIF-3p66-RB | 2012 | CG10161-RB | 225..436 | 87..289 | 225 | 75.6 | Plus |
| eIF-3p66-RB | 2012 | CG10161-RB | 669..1001 | 549..879 | 205 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12193972..12194952 | 1008..36 | 4290 | 98.2 | Minus |
| 3R | 32079331 | 3R | 23680298..23680357 | 116..175 | 210 | 90 | Plus |
| 3R | 32079331 | 3R | 23680829..23681078 | 549..798 | 185 | 71.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:09 has no hits.
FMO03215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:24 Download gff for
FMO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4810-RA | 54..1092 | 30..1060 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:48 Download gff for
FMO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4810-RA | 54..1092 | 30..1060 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:16 Download gff for
FMO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4810-RA | 54..1092 | 30..1060 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:16 Download gff for
FMO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12193960..12194958 | 30..1019 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:48 Download gff for
FMO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8019682..8020680 | 30..1019 | 97 | | Minus |
