FMO03216.5prime Sequence
1248 bp (973 high quality bases) assembled on 2008-07-09
> FMO03216.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGAGGTGCTGAA
GAAGGACGCCGCCCTGGGCTCACCCAGCAGCGTCTTCTACTTCCTGCTGC
TGCCCACGCTGGTGCTTTGGTACATCTACTGGCGATTATCGCGGGCTCAC
CTGTACAGGTTGGCCGGACGACTGCCGGGACCACGGGGACTGCCCATCGT
GGGTCATCTGTTCGATGTGATTGGACCCGCTTCATCTGTTTTCCGAACAG
TCATCCGCAAAAGCGCCCCTTTCGAGCACATAGCCAAGATGTGGATCGGG
CCCAAGCTGGTGGTCTTCATCTACGATCCGCGGGACGTGGAGTTGCTGCT
GAGCAGCCATGTCTACATCGACAAGGCATCCGAGTACAAGTTCTTCAAGC
CCTGGCTGGGCGACGGACTGCTGATCAGCACAGGTCAAAAATGGCGATCG
CACCGCAAACTGATTGCACCCACATTCCATCTGAATGTCTTGAAGAGCTT
CATCGAGTTGTTCAACGAGAACTCGCGTAATGTGGTGAGGAAACTGCGTG
CGGAGGATGGTCGCACTTTTGATTGCCATGATTACATGAGCGAGGCAACC
GTGGAGATTCTATTGGAGACTGCGATGGGTGTGTCGAAGAAAACGCAGGA
CAAATCGGGATTCGAGTATGCGATGGCCGTGATGCGGATGTGCGACATCC
TTCACGCCCGCCATCGGAGCATCTTTCTGCGCAACGAGTTCGTGTTCACC
CTGACGCGCTACTACAAGGAGCAGGGTCGCCTGCTGAACATCATCCACGG
CCTGACCACCAAGGTGATCCGCACAAGAAAGGCGGCCTTTGAGCAGGGCA
CCCGTGGGATCCCTTGCCCAGTGCGAGCTGAAGCAGCCGCCTTAGAGCGG
GAACCGGAACAGAATGGTGGTGTTGACCAGACCCCATCAACAGCTGGCAG
CGATGAAATGGATCGGGAGAAGGATATGAAAAGCCCATTCCCGGTGGCGG
GAATTGTCCTATTGGACAGTCGGCTGTCTCTAAGGATGACCTGGATGTTG
AGGACCATGAATATGGGTGGAGAAGAGCGCTTGGCCTTTCTGGATATTGA
TGCTCCGAAGGTCCAAGAATTGAATCATCTCTTACGAACGGAATTATGAG
CAGGTAGAACCGATCATGTTTCGGGGAACGGAACCCCAGCGGCCGGTTCT
CTCGTTCTTTCTGCTACTCGCTGCGCTGTTGTATAAGTGGGGCTATTA
FMO03216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4g15-RC | 2632 | CG11715-RC | 536..1710 | 37..1212 | 4835 | 95.3 | Plus |
| Cyp4g15-RA | 2505 | CG11715-RA | 536..1710 | 37..1212 | 4835 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11481524..11481966 | 616..1060 | 1655 | 93.5 | Plus |
| X | 23542271 | X | 11478384..11478583 | 236..435 | 1000 | 100 | Plus |
| X | 23542271 | X | 11477593..11477791 | 37..235 | 995 | 100 | Plus |
| X | 23542271 | X | 11479011..11479196 | 431..616 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:41 has no hits.
FMO03216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:13 Download gff for
FMO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4g15-RA | 509..1529 | 30..1055 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:38 Download gff for
FMO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4g15-RA | 532..1552 | 30..1055 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:15 Download gff for
FMO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4g15-RA | 532..1552 | 30..1055 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:15 Download gff for
FMO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11477589..11477791 | 30..235 | 98 | -> | Plus |
| X | 11478384..11478581 | 236..433 | 100 | -> | Plus |
| X | 11479014..11479196 | 434..616 | 100 | -> | Plus |
| X | 11481525..11481988 | 617..1083 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:38 Download gff for
FMO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11371622..11371824 | 30..235 | 98 | -> | Plus |
| arm_X | 11372417..11372614 | 236..433 | 100 | -> | Plus |
| arm_X | 11373047..11373229 | 434..616 | 100 | -> | Plus |
| arm_X | 11375558..11376021 | 617..1083 | 94 | -> | Plus |
