FMO03217.5prime Sequence
1059 bp (927 high quality bases) assembled on 2008-07-09
> FMO03217.5prime
TCGTATAGCATAATTAAACGAAGTTATCAGTCGACATGGCTCAGTCGACG
GCAACGGCGCCGCTCTACGCCGGCTACAAACCCCTGATCAGCTCGGTAAC
CACGGATACGGATCCGGATCCGGATATGGCCCCCTCCCTGTCAGCAGAAG
GAACAGCTGATCAGCCCCAAAAATCACAGAGAGAAGGCGAAGTGAAAGGA
GCATCATCAGAAGCCCAACGAACAAAAGCAAACCCAAACCAGATACTTTC
AGCCAGCAACAGCAGCTCAATCGACGAGCAAGACGAGGATCAAGTAGGAA
CATTGCCATTGCCCCTGCTGTCCATCAATAGAAGGACACCCACCCTGCTC
CCCCGCCCCGTTCCACCATCATCGACCCGATTCACATCGTCCTACAACGA
CGACCTGTGCACGTGCAGCAACTGCGCGTACTCCAGTTTCTCATCCTCCT
CCTCCTCCGCCTCGTCCACATCCTCGTCATCCACGAGCGCTACAGCAGCA
GGAACAGCATTAGCATCAGCAGCCGCATCCGCCGTTGCCAAGAAGCTAGC
ACGCTCCGTGACCGCCACCAGCATCATGGACATGCCGTACAAACACCTCG
CCGTCGCTACGCGTGCGCACCACCTCGCTGAATCAGCTGAAGAAGACCGC
CGACCTGGCCATCGAGAATGAGCTGCACGTCCTGTCCGTCGGTGATGTCC
GAGGAGCTGCGCAAGCTGCTGCCGCCCACCTCGGAGACCGTGATGACCAA
ACCCTTCCCCATCCGGGGCGAACGGACCATTGCCGACTGTACCACGCCGC
ATGTGATCGCCATGGGTTGGCCTGCCGGCGCGCGGCAAGACCTTTATCTC
AAGAAGCTAGCGCGCTACCTCACTGGATCGGAATCTCCACGCGTGTTTTC
AATCTGGGCGAGTACGGCGTCATGCACCACAGCATACAGTCGCACGAGTT
CTTCCCGCGCCGACAACGAGGAGGCGATTGGCCATTCCGCAACCGTGGCG
CCCATTCATGCCCTGCAACAACTCCATGCAATGGGTTGCTGAACGCCCAG
GAAGCATCG
FMO03217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfrx-RB | 3376 | CG3400-RB | 403..1423 | 36..1059 | 4595 | 97.4 | Plus |
| Pfrx-RG | 2928 | CG3400-RG | 403..1423 | 36..1059 | 4595 | 97.4 | Plus |
| Pfrx-RN | 3373 | CG3400-RN | 403..1420 | 36..1059 | 4540 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19506483..19507320 | 142..978 | 3760 | 98.9 | Plus |
| X | 23542271 | X | 19498775..19498880 | 36..141 | 530 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 3220..3254 | 162..128 | 121 | 82.9 | Minus |
FMO03217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:09 Download gff for
FMO03217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RB | 403..1376 | 36..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:38 Download gff for
FMO03217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RG | 403..1376 | 36..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:56 Download gff for
FMO03217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfrx-RG | 403..1376 | 36..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:56 Download gff for
FMO03217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19498771..19498880 | 33..141 | 98 | -> | Plus |
| X | 19506483..19507335 | 142..995 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:38 Download gff for
FMO03217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19392804..19392913 | 33..141 | 98 | -> | Plus |
| arm_X | 19400516..19401368 | 142..995 | 98 | -> | Plus |
