FMO03218.5prime Sequence
1212 bp (920 high quality bases) assembled on 2008-07-09
> FMO03218.5prime
TTCGTATAGCATAAAAAAACAAAGTTATCAGTCGACATGAAGATCGCCAT
CGCATTGCTGGCCTGCCTGGGCCTGGCCGCCGCTGCCAGCTTCCACCAGA
CCCACGAAGTCAAGATCGCCGACAAGGCCTTCCTGATGAAGCAGAAGTTC
CTCTTCGAGATCGTCTACCGCGTGGAGGATCCGCTGATGTTCGAGGACCA
CATCAAGCAGGGCGAGAAATTCTACTTTGAGGAGTCCTACTACACTCACT
ACGACATGTACATGAAGAAGTTCTTCGAGGCCTACAAGGCTCACGCCCTG
CTGCCCAAGGGCGAGTTCTTCGGCGCCCTGGTCATGTCCCACGCCAAGCA
GGCCCGCGGTCTGTTCAACTTCTTCTACTACGCCAAGGACTGGGAGACCT
TCGCCGCCAACGTGGCCTGGGCCCGCATGCACGTGAATGAGGGCATGTTC
GTCTACGCCCTGACCATGGCCGTGATCCACCGCAACGACTTCCATGGACT
GATGCTGCCCTCGATCTACGAGATCTTCCCACAGTTCTTCTTCAACAGCA
AGTTTGTGTTCGAAGCGGAGAAGTTCGACTACGAGATGTGGATGAAGATG
ACGATGTACGAGAAGGAGTACATGGATGTGTACTACAAGACCAACGGATA
CGACTACTCAACCATGTACCGGTCCAGCGACTACACCTACATGAAGGACT
TCAAAGACCTGGCAGTGGTGGAAAACTGATGGGTCTGGGCGAGCACTGGG
TACACCGAGGACAAGTTCATTCTGCGCGAGAACATCTACGAGTTCACCAG
GAGACCAGTGGCTGTCGATGGATGAAAGACGTGAAGAAGTTCTACATGCC
CCGTGGACTACACCCCGCGGACCTGAACCTTCTACACCAGGGAGTCCAAG
CTGTCTCTACTTCACCGGAGGATCGGGGCTGGGACGGCCTACTGGTACTA
TCTGGACCATGGACTAACTCCTTCTTCTGGACGGCAACACCTTTCGAATC
TCAGAAACGACCGGCTCCGGCGGAGTGGGGGCCCCAACCACCGTTGACCG
GCGTGCTCAGCCAGATACTAACATGGGAGGGCCCTGGTCGACCGGAATCT
CGGCGGAGAAATCCCGAAGTCCTCTCTGGTTAACAAGCCGAATTGGAAAT
GTGGGGCTACGGACACCCCCAGCCTGATATCTCCATACCAAACGGGGCAA
TTTGGGCTAAAG
FMO03218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsp1beta-RB | 2749 | CG4178-RB | 223..1253 | 27..1076 | 4365 | 95.8 | Plus |
| Lsp1beta-RA | 2605 | CG4178-RA | 79..1109 | 27..1076 | 4365 | 95.8 | Plus |
| Lsp1alpha-RA | 2625 | CG2559-RA | 93..696 | 37..640 | 1475 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 899010..899746 | 247..993 | 2865 | 96.8 | Plus |
| 2L | 23513712 | 2L | 898722..898941 | 27..246 | 1070 | 99.1 | Plus |
| X | 23542271 | X | 12490660..12491053 | 247..640 | 1070 | 84.8 | Plus |
| 3L | 28110227 | 3L | 66799..67167 | 259..627 | 780 | 80.8 | Plus |
| X | 23542271 | X | 12490383..12490540 | 37..194 | 445 | 85.4 | Plus |
| X | 23542271 | X | 12491157..12491342 | 663..850 | 365 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:42 has no hits.
FMO03218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:55 Download gff for
FMO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 72..1050 | 23..1013 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:53 Download gff for
FMO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 75..1053 | 23..1013 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:17 Download gff for
FMO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsp1beta-RA | 75..1053 | 23..1013 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:17 Download gff for
FMO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 898720..898941 | 25..246 | 98 | -> | Plus |
| 2L | 899010..899763 | 247..1012 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:53 Download gff for
FMO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 898720..898941 | 25..246 | 98 | -> | Plus |
| arm_2L | 899010..899763 | 247..1012 | 96 | -> | Plus |
