FMO03219.5prime Sequence
1212 bp (935 high quality bases) assembled on 2008-07-09
> FMO03219.5prime
TCGTATAGCATACATAAAAGAAGTTATCAGTCGACATGTCTAAGAAACCA
CGTGGAAACATTCACAAGATACGAGAGTTCGAATTGGAGAAGATCCAGCT
TGTGGACGAGTTTGATATCATACAGATCGTTGGCGAAGGATGGTTCGGGA
AGATTCTACTGGTGGAGCATCGGGGATCACAGACGGAGATGGTCCTGAAA
GCTGTACCCAAACCATATGTGACATTGCGTGACTTTTACCGGGAATTCCA
CTATGGACTCCACTTGGGAGTCCATCGACACATTGTGACCACCTACGACG
TGGCCTTTGAGACAGCGGGCTTCTACGTTTTCACCCAGGAGTATGCTCCA
CTAGGGGATCTCACATCGAACGTGACCGATTCGGGTGTGGGCGAAGTTTA
CAGCAAGCGGGTGGCGAAACAATTGGCCTCGGCCATTGACTACATGCATT
CAAAAGACATAGTGCATCGGGACATAAAGCTAGACAATGTGCTCATCTAT
CGCTCGGACTTCCAGCGCATCAAGCTCTGCGATTTCGGCGAGTCCTTTCC
CACAGGCTCCACTGTGGAGCGACGCAACGAGTGGTTGCCCTACAGTCCGC
CAGAAGTATTAGAAATTAAGCCCGAGGGCAGTTACAAAGCCGATCCCAGC
CACGATGTTTGGCAGTTTGGCATTGTGATTTTTGTGTGTCTAACTGGCTG
TTTGCCCTGGCAGAAGGCTGCCTCCGATGATCCGCGCTATGTGCGCTATC
TGGCCTGGCAGGCGGGACTTATGATGATGCCGCTGCGGCGAACTCCACGA
CTTTTCAAGCTGCTCACCTCGAATGCGCAGCGGATGTTCAAGCGCTTCTT
TGCCAGGATCTCCATTCGACCCAAGAGCCTGGCGATGTTACCAAGTTCCT
AGACGACCGATGGCTGGCCAAGACCGCCCAGAAGAAGATGGCCGAGTACG
AGACGGACGACTGTGCCCTCCATGTACTCCTTCCACAGCAGCCAGATGAA
AGAACCAGCTGCTCTACACCTGTCCGACTGCGTATCGAGAACCAATGTGT
GGACCGGCAGCAAAGAGACCCGATTCAAGGACTGATAAGATCCTCATTCA
TACGAGGAGGACAGAGGATACGAGGAACATCGGATCCAATCCTGTCGTTC
GCCGAGCGTAACGCTTATCTGACGTGCCAAGCCCATAGTTCGGGGGGAAG
AGCGCAAAAGGA
FMO03219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4945-RD | 1993 | CG4945-RD | 324..1378 | 36..1084 | 4835 | 97.8 | Plus |
| CG4945-RA | 2146 | CG4945-RA | 423..1477 | 36..1084 | 4835 | 97.8 | Plus |
| CG4945-RC | 2622 | CG4945-RC | 572..1626 | 36..1084 | 4835 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16568558..16568945 | 638..1020 | 1600 | 97.2 | Plus |
| 2R | 25286936 | 2R | 16567783..16568047 | 91..355 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 16568310..16568492 | 455..637 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 16568107..16568208 | 353..454 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 16566936..16566992 | 36..92 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:40 has no hits.
FMO03219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:48 Download gff for
FMO03219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RA | 391..1441 | 28..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:31 Download gff for
FMO03219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RC | 564..1614 | 28..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:27 Download gff for
FMO03219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4945-RC | 564..1614 | 28..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:27 Download gff for
FMO03219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16568109..16568208 | 355..454 | 100 | -> | Plus |
| 2R | 16568310..16568492 | 455..637 | 100 | -> | Plus |
| 2R | 16566928..16566992 | 28..92 | 95 | -> | Plus |
| 2R | 16567785..16568046 | 93..354 | 100 | -> | Plus |
| 2R | 16568558..16569044 | 638..1116 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:31 Download gff for
FMO03219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12454433..12454497 | 28..92 | 95 | -> | Plus |
| arm_2R | 12455290..12455551 | 93..354 | 100 | -> | Plus |
| arm_2R | 12455614..12455713 | 355..454 | 100 | -> | Plus |
| arm_2R | 12455815..12455997 | 455..637 | 100 | -> | Plus |
| arm_2R | 12456063..12456549 | 638..1116 | 93 | -> | Plus |
