FMO03222.5prime Sequence
1046 bp (521 high quality bases) assembled on 2008-07-09
> FMO03222.5prime
AGCATAAAAAAGCAAGGTTATCAGTCGACATGAACGACAACGGTAACCGC
GGAGCAGCGCCAGTCTCCGGTGGAGTGTGCGGTGTTGGTGGTGCGCACGG
AGCGGCTGGTGGCGCTGATGGTGCTGGTGGTGCTGGCGGTGGCGGCGGAT
GCGGGGCTGGCGGTGGAGGTGCTGGTGCAGGTCCGGGCGGGGGTCCCGGG
GGCGGAGCAGCTGCTGCGGACCTGGCTGGCGAGGCAGCTGGAGGAGCAGC
AGGTGGTGATGCAGCCATTAATAACCAAGCTAATGCCAATGGAACCAGCG
AGAGCCCAGCGAAAGGACTTAATTCTAGCGAGGATCTGGACGCCAAGCGG
CTCAAGTGTCGCGAAACGGAAGAAGGCCAGGATGAAGCCAGCACGATGAT
CGATGCGAATAGTGTGCTCAATAAGATCGCCAACCTGTACGCCGAACAGC
TGATGTCGGACATAGTGCTACTGGTGGACGGCAAGGAGTTTCCCGCCCAC
CGCGTCATCCTCTGTGCCAGCAACGACGTCTTTCAGGTGATGCTAATGAA
TCCGGAGTGGAACGAGTGCAGCAAGCACGTGATCGAATTGCACGAGGGAA
GCCTGCTGTTCGGCGGTGTTTCCGCAGTTCATCAAGTACCTATACGTTGG
CCAAAATCGAGGTCACGCTGCAGACGGTGATGCCAATGCTGGGCGCTGAG
CGACAAGTACATATACGCGACCTGATCGATCTCTGCGTGGGACTACATGA
ACAAGCACGTGGGCAAGCGGCCACCAGCGGGTTATCTTGTGTCCTGGCTG
CATATACGCTCTCCCTTCAGGCCCACCCACAACGATCTCACCGAAACCAC
TCAAGCGGTTTCTCAAATGGAACCTCGAGATGGGTTGCCGAGTCGCGGAC
TTTGTTGAAATGGGACCCGGCCATACTGAATACTGCTGTTGCACAAACGA
TCTTGGTTGGCACCCAGCGAGATCAATTGTTTGACATCCTGCAAAGTGAC
TTGCTTGCATCCGTCCCAAATCAATGGAAGCCCACCTAGTCAAGCG
FMO03222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-RC | 3196 | CG1841-RC | 367..1325 | 30..993 | 4260 | 97.2 | Plus |
| Tango10-RA | 3008 | CG1841-RA | 179..1137 | 30..993 | 4260 | 97.2 | Plus |
| Tango10-RB | 3247 | CG1841-RB | 418..1376 | 30..993 | 4260 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11721198..11721740 | 395..943 | 2020 | 96.9 | Plus |
| X | 23542271 | X | 11720662..11721027 | 30..395 | 1800 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:09 has no hits.
FMO03222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:12 Download gff for
FMO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RA | 177..1154 | 26..1011 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:27 Download gff for
FMO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1393 | 26..1011 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:23 Download gff for
FMO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1393 | 26..1011 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:23 Download gff for
FMO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11720660..11721027 | 26..395 | 98 | -> | Plus |
| X | 11721199..11721808 | 396..1011 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:27 Download gff for
FMO03222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11614693..11615060 | 26..395 | 98 | -> | Plus |
| arm_X | 11615232..11615841 | 396..1011 | 95 | -> | Plus |
