FMO03223.5prime Sequence
1252 bp (925 high quality bases) assembled on 2008-07-09
> FMO03223.5prime
CGTATAGCATAAAAAAGCAAAGTTATCAGTCGACATGTTGGGCCTTCAGT
CCTACGCCAGTTCCTCGGATGAAGAATCGGACCATGCGGACGCCGCCACA
GCCACCACGAATTCGGAGCCCTCCGCTCCCATTCCGGATCACCTGCTGCC
CGTGGACAAGACACACTCGCTATCCAAGTCCATTGCTGTTTGTGCGGCGC
CAACGGTGGTTCCCCTTGGAGCATCGGCCGTGCCCCGAACTCTGGATCCC
ACGCTCAAGGAGGTAACCTACAATCCGCGCTATGAGGAGATGTATGCTCC
GGTAAAAGGTCCGGAGCATCCGGACCTCACCATGCAGCAGCGCGCTCCGC
GGAACACCCTAACCGGCTACGTAGAGAAGGCCCACATCAATGCCTTCGAA
TTTGAGAACCAGCGACGCACCTTTCACACCTACGGCTACGCATTGGACCC
CAGCGTAGACGATCAGGCGGACGGCCAGTCTTTTGTGGGTGACCTGCAGT
CTGCGTACGATGACAATGGCAAGACGGTATTTGAGCCGCCCAAGGCAAAG
AAACTGCGCAAGCAGGAGAAAAATGATAATCCCGAGGACATTGAGGGCTT
TCTGGGTCCCTGGGGCAAGTTCGAAAACGAGGTGTCGGTGGCAAAGCCAA
ATGAACAGGAGCGCGCCGAACTGGACGAGCTGCTGTCTAAGCGACATAAG
CGCGGACGCATTTCCCGAGGATAAGCCGCTCGAGGAGAAGTCGACGCTGC
ACATCAAGGATGCGTACGACTATCAGGGCCGCTCTTATTTGCATGCTCCT
CATGATCTGGGCGTGAATCTACGATCGAATGCACCACCGACCAAATGCTT
TCTGCCCAAAGCGCATCATACACACCTGGTCGGGCCACACAAAGGGCATC
TCCTCATCCGCTGGTTCCCCAAGACCGCTCATCTTCTGCTCTCGGATCAA
TGGACTGTCGCGTCAAACTGATGGGAGGTTACGGCGAGCGACGCTGCCTA
CGCACCTCTCGGTCACCGGCAGGCCATCAAGGATATTTGCTGGAACAACA
GGGTACCTACTTTCCTGTCTGCCTCGATGAATCGCTTAATAAAGATGGGT
GATGCCCGAACGGAGAAATGACGGTCCCGAATTCCAACCGGTAATTGCCT
TCTTGGTGAAATCCATCCGGATAACATGACACGCACTTTTGGTTCTGTCT
GTGCCGCACCTCTTCAGGACGGAGAGGCATATATTATTTGTTGTGGGAGA
CA
FMO03223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45099-RA | 2012 | CG45099-RA | 206..1350 | 35..1174 | 4865 | 96 | Plus |
| CG6015-RA | 2012 | CG6015-RA | 206..1350 | 35..1174 | 4865 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22033364..22034081 | 753..35 | 3500 | 99.4 | Minus |
| 3R | 32079331 | 3R | 22032936..22033298 | 1113..754 | 1125 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:39 has no hits.
FMO03223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:13 Download gff for
FMO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 309..1357 | 30..1076 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:24 Download gff for
FMO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 201..1249 | 30..1076 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:44 Download gff for
FMO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 201..1249 | 30..1076 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:44 Download gff for
FMO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22032973..22033298 | 754..1076 | 94 | <- | Minus |
| 3R | 22033364..22034086 | 30..753 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:24 Download gff for
FMO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17858695..17859020 | 754..1076 | 94 | <- | Minus |
| arm_3R | 17859086..17859808 | 30..753 | 99 | | Minus |
