FMO03224.5prime Sequence
822 bp (600 high quality bases) assembled on 2008-07-09
> FMO03224.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGACGAGCGGTACG
GTAGCAACGGCGGTGGAGGTGCAGCTGCCGCTCAAGGTCGTTCGCCGTAA
AATCGAGCGCGTTGGCTTCGCTTACTTTGCGCAACGGCGCCAATTTCTAG
CTCCCGGCGGCGTGGAGCGCAGCGAAAGCGATGAGAAATTGGAGGGCGTG
GGCGAGGAGGTGGACATCAGCTACCTAAAGTCGCTGGATCCTAAGGAGTG
GAAGGACCAGGATCATTACGCCGTTCTTGGCTTGGGCAAGCTCCGATACG
AGGCCAGCGAGGATGATGTTCGACGGGCTTACAGGCGCATGGTTCTGCTG
CACCATCCCGATAAGCGGAAAGCCAAGGGCGAGGAAGTCATCCAGGACGA
TGATTACTTCACATGCATAACCAAAGCTTACGAGATACTGGGCACATCCA
AGCCGCGCCGCAGCTTTGACTCAGTGGATCCCGAGTTTGACGACTCGCTG
CCCTCACAGAACGACATCGATAACGACTACTTTGGCGTATTTAACAAATT
TTTCACACTTAACGGGCGCTGGAGCGAAAAGCCGCATGTTCCCTCCTTCG
GGAGGTGACGCCAACGCGAAGAGGTGGAGCCGCTCTACACTCCTGGTACG
ATTTAAGTCATGCGGGGATCTCTCTCTCTTTGAAAAAGAGAAGAGAAGGA
GCCGCACCGCCCAAACGTCCTTGATCAAAGAGAACGCGGCTCGATCAACG
CTGAGAGGAATGTCTCGATCCGTCCTCTGCCATAGCCTACACATGATAGC
GATCTACGCCTCAACAGGCATA
FMO03224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10565-RB | 2538 | CG10565-RB | 477..1108 | 36..662 | 2975 | 98.7 | Plus |
| CG10565-RA | 2237 | CG10565-RA | 176..807 | 36..662 | 2975 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21135618..21135877 | 295..36 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 21134689..21134906 | 654..441 | 830 | 96.3 | Minus |
| 3L | 28110227 | 3L | 21135363..21135510 | 442..295 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:26 has no hits.
FMO03224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:15 Download gff for
FMO03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 160..806 | 28..672 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:28 Download gff for
FMO03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 171..817 | 28..672 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:58 Download gff for
FMO03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10565-RA | 171..817 | 28..672 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:58 Download gff for
FMO03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21135364..21135509 | 296..441 | 100 | <- | Minus |
| 3L | 21135618..21135887 | 25..295 | 97 | -> | Minus |
| 3L | 21134670..21134905 | 442..672 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:28 Download gff for
FMO03224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21128464..21128609 | 296..441 | 100 | <- | Minus |
| arm_3L | 21127770..21128005 | 442..672 | 95 | <- | Minus |
| arm_3L | 21128718..21128987 | 25..295 | 97 | -> | Minus |
