FMO03227.5prime Sequence
823 bp (821 high quality bases) assembled on 2008-07-09
> FMO03227.5prime
AACTTCGTATAGCATAAAAAAGCAAAGTTATCAGTCGACATGGCTGGCAA
GCGACAACCCACTTCGAACCTGAACCACGAAAACTGGGACCTGGAGGAGG
AACCCGAGGAGCGCGGCACATTCCGCACGGCCACCGAAGAGGAGCTAAAG
ACACGCGTTATCAAGAAGGCGCGCCGCAAGATTGCCGGTGGATCGTCCGC
CGCTGAAGAGGATGGCGCCGAAGAAAAGACTGCAGAGCCCAAAAGTGTGT
TCAGTGGCTTTTCCGGTTTCGGCAAGCCGGCTGCGAGCCCAGCCGCGGGT
TCGCCTTTCTCCTTCCTGGCCAATGTGACGGCACCAGCCACGACCTCTAG
CAGCGAGCCAAAAAAGTCTGCATTCTCGTTCGGGTTCAGCTCCAGTTCCA
GTTCGGCCGATCGGCCTGTCAGCACTAGCATTTGCGGCACCGCCAGCACC
AGCAGCACGGCCCCCTCTCCTTTGCCGGCCAAGGAATCAACAAGTACCGT
CGATGGCGCCAAGCCGACCACCTCGATATTTGGCAACATATCAGCTGCCA
AGAAGGAGAGTAGCGAGGCCAAAACCAGCAGCAGCAGCACTAGCCTCACA
TCCACCATGGAGACCTCCGAGTACCGTGAAAGCGTTGCTGACCTAAATCG
GTCCGTCATAAAATTCCTGCAGGACCAAATGGGCAAAAGTCCCTACTGCA
TACTGACTCCAGTGTTTAAGAACTATGATGAGCATCTAAAGGATCTGCAG
ACGAGGAGAGCGCCAGAACGAACTCCACGAAATCCAAAACGGCACAAGCT
CGTTCTCAAGAACCAATTGCAAC
FMO03227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup50-RA | 1907 | CG2158-RA | 103..886 | 40..822 | 3865 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8123419..8123977 | 265..822 | 2730 | 99.6 | Plus |
| 2R | 25286936 | 2R | 8123138..8123365 | 40..267 | 1125 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6880 | 533..608 | 110 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2375 | 540..608 | 108 | 63.8 | Plus |
FMO03227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:16 Download gff for
FMO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-RA | 123..906 | 40..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:34 Download gff for
FMO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..886 | 40..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:43 Download gff for
FMO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..886 | 40..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:43 Download gff for
FMO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8123138..8123363 | 40..265 | 99 | -> | Plus |
| 2R | 8123420..8123977 | 266..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:34 Download gff for
FMO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4010643..4010868 | 40..265 | 99 | -> | Plus |
| arm_2R | 4010925..4011482 | 266..823 | 99 | | Plus |
