FMO03230.5prime Sequence
1270 bp (327 high quality bases) assembled on 2008-07-09
> FMO03230.5prime
AGCATACATAAAAAGGAAGTTATCAATCGACATGGTGGCGAAGGAGGACC
CTTTTGATCGCATCTACGCCTACAGCCATACATAACGAAGAGGACTCGGG
CAAGACCAAGTCCGGCGACGAGGATCCCGACCAGGAGATCAAGGGCGGCA
ACTCATCCAGCGGCGAGGACTTGAACACCAGCAAGCACAAGTCAAAGCAT
GCCAAGAGCACCAAGCATGAGCGTAGCAGCAGCAGCCGATCTCACTCCAA
GAGTAGGTCTGACTCGGATAAGAAGCACAAGAGCTCTCGCCACGATAAAT
CCAAGGATAGAGATAAAGATCGGGAGGGTCAGAAGGAAGCTAAGGATCAC
AAAGAAAAGAAGTCAAATGGCGAGCACAAGTCAAAGGATTCCAGCAAATC
CAGCAGCAGTCACAAGAGCAGCAAATCCGAGAGCCACAAGAGCGAACACA
CCAAAAGCAAGCACGAAAAGGACAAAACTTCTCACAGTGAATTAAAGGAA
GTCAAAGACAAGTCGAGCAAACACAAATCATCGTCCTCCAAGTCATCAAA
GCGCTCCCATAGTCCCCCACGCCACGAGGAGGAGTCCCAAAAAGCAAAGA
TACCAAAAGTTAAATCGAAATCTGAGGAAGATTCCGCTGATGGTTTTGAC
TCCAGCATGGGCGCAAATTTTTGACGATGTTCTTGGTCTGCTAAACATAC
CCATAAGTAGCAAGAAGAGCAGCAGCAACAGCCAAGAGCAAGTTTGTCGC
CAAGCCAACTGCAGCCCCTTTCCTCGGCCAGCTCTATCAACACCTACGAC
TGCTGGGTCGTCTACAGAGGCACTCTCACTAACAAGTCGAACGAACCTCC
AAAAACCCGAACTGTTGGGCGTCCATCGCTAAGCTGGAGCCCTTGGATCC
AAACATTGGCATTAAAACTTCCTACCTTATCCATTACTGCAAGCCCATGC
CATTAAATCAGAAAGTTATGGACGTCGACCTTTTATCGGGGGGGCTCACA
CAAGGCCGCCAGCCTCCCCGATACTTTATGAGCCAGAAAGCCCAACGCCA
AGGCCATCCCCCTTCAAAAGATGGTCCGCACCAGATTTCTATTTGCGGGG
TGTGAAAACCGTGCCAGATCCCGACAGAGTCCCTTTCCCCTTATTGGATT
TCTCTGAACCCCGGGGGTCCGTCCAAAGCAATTTTGCCAGTGCCATTTGA
GATATAAAGGGGAGGCTCGGTCTCGATTTGTGAGCGCCACTACTCTCCGG
GTTTTTGTGAGACGCAAACG
FMO03230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloA-RB | 2697 | CG6755-RB | 374..1372 | 32..1038 | 4220 | 95.5 | Plus |
| EloA-RA | 2869 | CG6755-RA | 546..1544 | 32..1038 | 4220 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23252399..23252837 | 32..471 | 2090 | 98.9 | Plus |
| 3R | 32079331 | 3R | 23252890..23253245 | 469..828 | 1540 | 97.8 | Plus |
| 3R | 32079331 | 3R | 23253325..23253476 | 853..1006 | 350 | 87.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6782 | 690..765 | 128 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6899 | 694..803 | 127 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2425 | 685..816 | 120 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2457 | 694..765 | 117 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6803 | 694..765 | 117 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6878 | 694..765 | 116 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6801 | 694..740 | 114 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6820 | 694..741 | 111 | 72.9 | Plus |
FMO03230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:19 Download gff for
FMO03230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RB | 393..1380 | 32..1028 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:24 Download gff for
FMO03230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 546..1533 | 32..1028 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:27 Download gff for
FMO03230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloA-RA | 546..1533 | 32..1028 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:27 Download gff for
FMO03230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23252892..23253269 | 471..852 | 96 | -> | Plus |
| 3R | 23252396..23252836 | 30..470 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:24 Download gff for
FMO03230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19078118..19078558 | 30..470 | 98 | -> | Plus |
| arm_3R | 19078614..19078991 | 471..852 | 96 | -> | Plus |
