FMO03232.5prime Sequence
1277 bp (988 high quality bases) assembled on 2008-07-09
> FMO03232.5prime
ACTTCGTATAGCATACATTAAAAGAAGTTATCAGTCGACATGGTGCGGCC
CAACAACAACCAGCTGCCGGAGAACCTTCCGCAGTTGCAGAACCTCATCA
AGCGGGATCCGGAGTCGTATAGCGATGAGTTCCACATCCAGTACCAACAC
TTTCTTAGCTTGCTGGAAGTTTTTGCGCTGAATCCCAGCGAAGAAAACAA
ATCCCTGGATGACATCGTCATGTTTGTCGCCCAGGTGGCTCAGTGCTATC
CGGCCGTCTGCGAGGAGTTCCCAAAGCGTCTTTCCGATTTGCTGAAGAAC
TATGCCACCGTTCTGGACCCGGCTATGCGTAACTGCTTTGTGAAAGCTCT
AATCCTGCTGAGAAACAAGAACCTAGTGCCCGCGCTGGACATACTGGAAC
TGTTCTTTCAGTTGCTGCGGTGTCCGGACAAGAATCTGCGCACCTTTCTG
CAAACGCACATTGTGACGGACATCAAGAATATGAATGCCAAGCACAAGGA
CATGAAGCTCAATTCGAGCCTGCAGGCATTCATGTACTCCATGCTGAAGG
ATGCCAATCCGAAGGCAGCCAAGATGTCCGCTGATATCATGATCGAGCTG
TACAAGAAAAACATATGGAATGATTCTAAGACGGTGAATGTCATAGCCAC
TGTGGGGTGCTTCTCTAAGGTAACAAAAGTACTGGTCACCTCGCTCAAGT
TCTTCCTCGGCCACGACGAAGAGGATGAAGAGGAGGACACTGACAGCGAG
AACGAGGTGGACCTTAAGGGTGCTCTGATGGCCAATCGAGTCAATAAGAA
AACCAAGAAGCGGACCAAGCAACTGGCGCAGATCAAAAAGCAAGCGGTGA
AGGCCCAGAAAAAAAAAAGAACGCTCCAGCCTTTAACTTCTCAGCATTCA
CCTGGTGCACAATCCGCAGGGAATGGCCGAACGGCTCTTTTAGCAGCTGC
AGGCCCACCAACGAGCGATTTGAGTGAAGCTAATGCATTTGGACGTTATT
TCCCGGCTGATCGGCATCCACGACCTCTTCCTTTTCGGTTTCTATCCGTA
CATAACACGCTTTCTGCACCCCCACAACGCCAGGTGACACCGTGTGCTTC
AGTTTGCCGCCCAAGCTCCCACGAACTGGTTCCGGAAGAACATCCTCGAG
CTATCTAAGAGCGAATCGCACACTTTCATTTACTGAACCGCACTCCCACG
AAGTGTATGGCCTTAGCCTCGAATGCCACGCCGGTGAAGATATTTGTCAT
CTGATGCTGAGTTCTCCTCGCAGGGTC
FMO03232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 80..1194 | 39..1151 | 5285 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9112713..9113333 | 1133..516 | 2705 | 98.2 | Minus |
| 2R | 25286936 | 2R | 9113395..9113872 | 516..39 | 2390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:14 has no hits.
FMO03232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:24 Download gff for
FMO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 78..1201 | 31..1155 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:18 Download gff for
FMO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 76..1199 | 31..1155 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:47 Download gff for
FMO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 76..1199 | 31..1155 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:47 Download gff for
FMO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9112713..9113332 | 517..1133 | 98 | <- | Minus |
| 2R | 9113395..9113872 | 32..516 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:18 Download gff for
FMO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5000218..5000837 | 517..1133 | 98 | <- | Minus |
| arm_2R | 5000900..5001377 | 32..516 | 98 | -> | Minus |
