FMO03233.5prime Sequence
1108 bp (1026 high quality bases) assembled on 2008-07-09
> FMO03233.5prime
ACTTCGTATAGCATAATAAGCAAAAGTTATCAGTCGACATGGAGCAGAAC
TCGAACAGCAGCGTTGCGGATACGTTTGCGGAGGCACCAGCGACGGACGC
GGATTACGGCACTGAGAACTGTTCCGGATCCGGAATGTCGGTCGGCGACA
CCGTGAGCGCCAACCACGAGTTCCAGACCATGAAACCGGGTCCCGGTGTG
GTGCACAAGGTGATGCCGGTGGCAAATAGCGCCAGCAGTGCTACCGCAAC
CAACGGACGCACGCGCTCCGAGATGCCGCACAGCGAGCTGGTGAAGATGC
TGTACTACCTGGAGGGCGAGCTGCAGGCACGGGATGTCTGCATAGCCGCC
CTGAGGAACGAGCGGGTAAAGCAGCTCATTGCACAGCTGCGCACCAAGCG
ACTGCAGCCGAACGATCCGTATGCGGCCATATTCCGGGACAAGATCGCAC
TCAATGGCAATCTGATATCAAGGGAATCGTCTACGCAGGCGGCGCAAGCG
GAGATGGAGGTGCGCCAGATCATTGAGCAGCAAATGGAGCAGCAGTATCA
GATGGTTAGCAAGCAGAGGGCCACGCATGTGCGTATGGTCAACATATTGA
CCGAATCGCTGGAAAACAATCAGCGTATGCTCCAGGAGCTGGAGGAGGAG
AAGCGCAAGCACGAGAACACCACGGCTCAGGGTGACGACATCACCTACGG
CCTGGAATTGGAGCGCAACAAGCTGAAGCAGGACCTAGAGGAGGAGCGCG
CTCACGTGGCCAAAATGGAGAAAGATCTGAAGAAGCTGCAGGAGACGCTC
GAGTACGAGCGCAATCGACAAAAGCAGATTGTGCTGCTGTTGATTGCGGA
GCGCAAAAGATCCTCATGAAGTATATTGAAGAGGGGAAACGATCGGAGGA
TCTGGCCCAAATTCTGGCCGAGAAGAAGCAGCGCTCGGATACCATTGCCG
AGGGTCCTCGAGGAGGAGAGCAAAAAGTCGCTTGCCGCATGGAAGGAGGA
ACTGGAGAAGCAAACGCCATGCCATGGAGCAAGGAGCGTAAGTCCTTGTT
TGGCAAACTAGCCAAGGAGGGAACTCCCGGGTCAGGGAGGCTGGAGCAAG
AACCTCAT
FMO03233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-RB | 3360 | CG10915-RB | 310..1366 | 39..1103 | 4945 | 98.3 | Plus |
| CG10915-RA | 2823 | CG10915-RA | 310..1366 | 39..1103 | 4945 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18161029..18161876 | 39..885 | 4160 | 99.6 | Plus |
| 2R | 25286936 | 2R | 18161951..18162131 | 884..1070 | 565 | 93 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:40:56 has no hits.
FMO03233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:57 Download gff for
FMO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 304..1372 | 30..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:32 Download gff for
FMO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 301..1369 | 30..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:12 Download gff for
FMO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 301..1369 | 30..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:12 Download gff for
FMO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18161013..18161875 | 31..884 | 98 | -> | Plus |
| 2R | 18161952..18162142 | 885..1083 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:32 Download gff for
FMO03233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14048518..14049380 | 31..884 | 98 | -> | Plus |
| arm_2R | 14049457..14049647 | 885..1083 | 93 | | Plus |
