FMO03234.5prime Sequence
1222 bp (960 high quality bases) assembled on 2008-07-09
> FMO03234.5prime
CTTCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGGAGCCCATTG
ACATTGCGCGTCTGGAGGAGGCGGTCGTGTCGTTCTACCGCTCGAACTCG
CAGAACCAGGCGATCACCCATGAATGGCTTACCGATGCGGAGGCCAGTCC
ACAGGCCTGGCAGTTTTCCTGGCAGCTAATGCAGCTCGGCAAGAGTCAGG
AGGTGCAGTTCTTCGGCGCCATCACGCTGCACTCCAAGCTTATGAAGCAC
TGGCACGAAGTGCCGCCAGAGAATCGCGAGGAGTTAAAGCAAAAGATACT
CGAATCCATCGTTCGCTTCGCTGGCGGACCGAAGATCGTCCTCAATCGGT
TGTGCATCTCGCTGGGCGCTTACATCGTTCACATGCTGGGCGAATGGCCC
GGCGCCATCGAGGAGGTGATCAACACGTTTCAGAATCAACGGATGCCAAA
TGTCAGCGCCGATGTGCAATTGTGGATCATGCTGGAGGTGCTGACCGCCA
TTCCCGAGGAAGCGCAGGTCATACATACGTCTGTCAAGCGGGTTGTTCTG
CGCGCCGAGATCGCCAAGCGAGTGCAGTTGGTCATTCACACCGTTGAGCG
ATATCTGAAGCTGCAAATGAACCGCGTGTGGGATGCCGAGGCGTACAGTA
ACATGAACAGGGCCGTTAAGTGCGTCGGCACCTGGATCAAAAACATCGGC
TACACCATTGAGGGCTGCGTCACCATCACCGCCGTGCTCCTGGAATGGTG
CACAAGTGCTATTGGCCCTGCATACACGCCGGCGACGGCTGCATGACCGC
CGATGAGAACGAACTGGCCGAGTCCTGTCTGAAAGACCATGGTGAACATT
ATCATCCCAGCCAGACTGCCACACTATCCAAAGACGGCATTTGTGCTTAT
AAAATGTTCCTGGACTCGCTATCCGAAATCCCAAAGACGGAATGAAGGAG
GGAGACGACACGAGACATAACCGTACCTTATCTACATGCTGTCGTCTCTT
TCGTGGAGCGACATTCGACGCTGTTGCTTCAACGGCTCCCGTCCGCGATC
GGAATTGTCTATTCTATGGCATCGCATCGGGAAGGAAATTCTCCACTGCA
CGACAAGCGGCAATTACCCGGTGGAGGATCCTGCACCACATGCTTGGGGT
TGGTATTGCTGCAGACAATGTCTTCCCATTTCTACTCAGAGACTAAACCA
GGGTCTGTGGAGAATACCTCAG
FMO03234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdm-RB | 3691 | CG7212-RB | 132..1298 | 36..1184 | 4890 | 95.8 | Plus |
| cdm-RA | 3253 | CG7212-RA | 132..1298 | 36..1184 | 4890 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18182596..18183094 | 690..192 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 18182087..18182533 | 1128..691 | 1195 | 91.1 | Minus |
| 3R | 32079331 | 3R | 18183191..18183348 | 193..36 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:19 has no hits.
FMO03234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:16 Download gff for
FMO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1256 | 30..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:49 Download gff for
FMO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1256 | 30..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:58 Download gff for
FMO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdm-RA | 126..1256 | 30..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:58 Download gff for
FMO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18182057..18182533 | 691..1152 | 91 | <- | Minus |
| 3R | 18182596..18183092 | 194..690 | 100 | <- | Minus |
| 3R | 18183191..18183358 | 26..193 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:49 Download gff for
FMO03234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14007779..14008255 | 691..1152 | 91 | <- | Minus |
| arm_3R | 14008318..14008814 | 194..690 | 100 | <- | Minus |
| arm_3R | 14008913..14009080 | 26..193 | 96 | <- | Minus |
