FMO03235.5prime Sequence
861 bp (861 high quality bases) assembled on 2008-07-09
> FMO03235.5prime
TAATTCGTATAGCATACAAAAAAAAAAGTTATCAGTCGACATGTCGCTCA
AGCCCAAAATATTGGAGTTTGTCGATGTTTGGCCGCGCCTGCGCTGCATC
GCCGAGTCGGTGATAACGCTCACCAAAGTGGAGCGCTCGGTGTGGAATAC
TAGCTTCAGCGACGTTTACACACTGTGCGTGGCGCAGCCGGAACCGATGG
CTGATCGTCTTTATGGCGAAACAAAACACTTTCTTGAGCAGCACGTCCAG
GAGATGCTGGCCAAAAAGGTGCTGATCGAGGGAGAATGCTCCCATTCCAA
TGGTGGCCCAGACCTTCTCCAGCGTTACTACATCACCTGGATGGAATATA
GCCAGGGTATCAAGTATCTGCACCAATTGTACATCTACCTGAATCAACAA
CACATCAAGAAACAAAAGATTACCGATACGGAATCGTTCTACGGTAATCT
GTCAAGCGATGCTGCGGAGCAGATGGAGATTGGCGAGCTAGGTCTAGACA
TTTGGCGCCTGTATATGATTGAGTACTTGTCCAGCGAACTGGTCCGTCAC
ATACTCGAGGGCATTGCCGCAGACAGAGCTAGCAATGGCACCTTGGGATC
ACCATCGCGTGCAAATTATCAACGGAGTGATACACAGCTTCGTGGAGGTA
CAGGACTATAAGAAAAACAGGCTCGCTTAAGCTCTACCAGGAAACTCTTT
TGAAAGGCCCCATGCTGGAGGCCAGTGGCGCCTACTACACAGACGAGGCT
AACAAGTTGCTCCATCGGTGCTCATGTCGGAGTACATGCAGGAGGTTATC
GGAAACGGAATATGAAAGCCGGAAGCCCAAAAGTTTTAACGTCAGTTCCC
TGCCAAAACTA
FMO03235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul2-RB | 2831 | CG1512-RB | 177..1001 | 38..861 | 3845 | 98.4 | Plus |
| Cul2-RA | 3426 | CG1512-RA | 284..1108 | 38..861 | 3845 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21660123..21660600 | 385..861 | 1895 | 96.7 | Plus |
| 2L | 23513712 | 2L | 21659838..21660064 | 158..384 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 21659151..21659272 | 38..159 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:53 has no hits.
FMO03235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:22 Download gff for
FMO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cul-2-RB | 155..983 | 33..860 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:51 Download gff for
FMO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-2-RA | 279..1107 | 33..860 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:45 Download gff for
FMO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul2-RA | 279..1107 | 33..860 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:45 Download gff for
FMO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21659143..21659272 | 31..159 | 96 | -> | Plus |
| 2L | 21659840..21660064 | 160..384 | 100 | -> | Plus |
| 2L | 21660123..21660599 | 385..860 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:51 Download gff for
FMO03235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21659143..21659272 | 31..159 | 96 | -> | Plus |
| arm_2L | 21659840..21660064 | 160..384 | 100 | -> | Plus |
| arm_2L | 21660123..21660599 | 385..860 | 97 | | Plus |
