FMO03236.5prime Sequence
1251 bp (942 high quality bases) assembled on 2008-07-09
> FMO03236.5prime
TTCGTATAGCATAATAATACGAAGTTATCAGTCGACATGGCGCCTCCGGC
TGCCCCCGCTCGCTACATAGCCAACAAGGCGGACAACCAGATTCTCTCAA
AGAAACCGCCCAAAAGACCGGGCCTAAATGGCAACAACAAGACGAAGGAA
GCCACACCGGCCGGCAAAAAAAAGGATAAGGATGCTAAAAAGCGCAACCA
ACCCACAAGTGGTGGTCAAGAGAAGGGGCTTCCCAACCCCATAATGCCCA
GTGTTCAGACCGCCTTCAAGACCTTCGTGAGCGCCCGGTTGTGCAGCGCC
ATTTGGGCGTACATAGCCGACTGCGACGAGACGTTCAACTACTGGGAGCC
GCTGCACTACATCATTAATGGCCATGGACTCCAGACGTGGGAGTACAGCC
CGCAGTTTGGACTCCGATCGTACACCTACCTATTGCTGCAGGGCGTGCCC
GGATACTTTTACCAAAAGTTGTTCAATCCCAGTCCCATACTCATCTTCTA
CATGGTGCGATGTATGTTGGGTTTCGGTTGTGCCGTAATGGAGCGATATA
TGTACAAGTCGATTTGTCAAGAGTTTGGAATTCACATCGGTCGTCTGTGG
CTGATATTCCAGCTCATCAGTGTGGGCATGTTTGTGTCTAGCACCGCTCT
ACTGCCATCCTCCTTTTCCATGTACTTTGGCTGTGCTGCCCTGGCCGCGT
GGTGGCAACAAATTACTGTTTTGCCATATTCCTGACAGCAATATCCGCTT
TGCTTGGTTGGCCATTTGCTGCGCTTATTGGCATACCGCTGGTGCTGGAG
ATGCTTTTAAGGCAGCGTGATTGGAAGACCTTGTTCAGTGGACACTGATA
TCGGGCGCCACGGTTGCCCTTCCCATGATTGCAATTGATACCAAGCTATT
TTGGCAAACTTGACATTTGCTCCTCTAAATATTGGTTGGGTACAATGTGT
TCACCATCACGGAACCAAACATTATTTTGGTACGGAACAACTTCAGTTAC
TTACATTATCAATGGCTTCCCTTAACTTTTATATTATTTGGGCTTCCTGC
CACTTCAACCTACCCATTATGCCATGTCATTAACTATTTGGATTGTGCCC
AGCCAAATACAAAGTCGACGTAAATTTCCCCACTAACTCTCGCTGTGCTC
CCTGACTGGGGCTTCCTGCTTTTTTGCCAACCGCAAGAATGGCTTCGTTC
ACATATCTCGTAACCGGATTGGCGAACCATCTAACGTGGTGAGATGGTGA
T
FMO03236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-RA | 2363 | CG11851-RA | 114..1255 | 37..1185 | 4835 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25221917..25222282 | 194..559 | 1830 | 100 | Plus |
| 3R | 32079331 | 3R | 25222335..25222813 | 558..1042 | 1775 | 95.3 | Plus |
| 3R | 32079331 | 3R | 25221702..25221859 | 37..194 | 760 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:53 has no hits.
FMO03236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:31 Download gff for
FMO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 100..1229 | 30..1165 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:01 Download gff for
FMO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 104..1233 | 30..1165 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:37 Download gff for
FMO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 104..1233 | 30..1165 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:37 Download gff for
FMO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25221692..25221859 | 30..194 | 96 | -> | Plus |
| 3R | 25221918..25222280 | 195..557 | 100 | -> | Plus |
| 3R | 25222335..25222812 | 558..1042 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:01 Download gff for
FMO03236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21047414..21047581 | 30..194 | 96 | -> | Plus |
| arm_3R | 21047640..21048002 | 195..557 | 100 | -> | Plus |
| arm_3R | 21048057..21048534 | 558..1042 | 96 | -> | Plus |
