FMO03237.5prime Sequence
742 bp (742 high quality bases) assembled on 2008-07-09
> FMO03237.5prime
TTCGTATAGCATACATAAAACAAAGTTATCAGTCGACATGGAGGGCTATG
GGAGCACCTATGCCACCACTCCGCTGGCCACCGCCCAGCCCAGTCCCAGC
GAGCAACAGGAGGCCATCGCCCTGAAGAAGGCGCTCGAGTGGGAGCTGAG
TTTGGACGCCAGGGAGCTGCGTTCCCACGCCTGGTACCACGGCGCACTGC
CACGCCAGCGGGCCGAGGAGATCGTGCAGCGCGAAGGCGACTTCCTGGTC
CGCGACTGCGCCTCCCAGCCGGACAACTATGTGCTCAGTTGCCGGAGCAA
AGCGGCTGTACTGCACTTCGTACTTAATAAGTTGGTGCTTCAACCGGAGA
CGGTTTACGAACGTGTGCAGTACCAGTTTGAGGAGGATGCCTTCGATACG
GTGCCCGACCTAATTACCTTCTACGTGGGATCCGGCAAGCCCATCTCGTC
AGCATCGGGAGCGCTCATTCAGTTTCCCTGCAATCGCACCTATCCGCTCT
CCTTCTACGGCCACAAGATCGTGGGCAACCAACTGCACACGCAGATGCTG
GCCGGTCTGCGAGGTCTGAGTCCTCTGAACTCGCCGATGGGCAGCAATGG
TGCAGTGGGAGCAGGTATGAACGCTACCCTTTCGCTTCGAACCGCACAGC
AGCAGCAGCAACAGCTCTCGCCGATGGTTGGCTCACCGGGCCAGTCCGCA
CTGCTCGCCGCCGCGGGGCGCGTAAAAGGTGGCTCCCCCCGC
FMO03237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 665..1362 | 38..736 | 3305 | 98.6 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 334..1031 | 38..736 | 3305 | 98.6 | Plus |
| CG9098-RA | 3481 | CG9098-RA | 676..1373 | 38..736 | 3305 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6009856..6010242 | 717..330 | 1780 | 99 | Minus |
| 2L | 23513712 | 2L | 6010309..6010606 | 335..38 | 1445 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 20:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 147..178 | 124 | 87.5 | Plus |
FMO03237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:32 Download gff for
FMO03237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RB | 297..1004 | 30..739 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:54 Download gff for
FMO03237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1376 | 30..739 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:57 Download gff for
FMO03237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1376 | 30..739 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:57 Download gff for
FMO03237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6010313..6010619 | 21..331 | 96 | -> | Minus |
| 2L | 6009834..6010240 | 332..739 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:54 Download gff for
FMO03237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6009834..6010240 | 332..739 | 97 | <- | Minus |
| arm_2L | 6010313..6010619 | 21..331 | 96 | -> | Minus |
