FMO03239.5prime Sequence
1261 bp (919 high quality bases) assembled on 2008-07-09
> FMO03239.5prime
TTCGTATAGCATACATAAAAAGAAGTTATCAGTCGACATGTCTGCTAGCT
CCTCCAGCAACGCTTGCAAGCTCTTGCTGCTCGGCCGCTGCCTGCGCGCC
GTGCTCCTCAGCGTGGCCATCCAATTCCTGCTGCTCACAGTGTTCCTGCT
GTTTGTGAACTTCCAACTGTTGCATCCGCTCGCCTGGGTGACGGGAACAC
TGCGTCTGGTAGCCAGTTGGTACACCTGGTTTGCCAGCATCCCTCTGGTG
GCCTCCGTCGTGCTCTACGGTGTGATTCTTTGCCAGCAGCACTTGTCGGA
GCGACGCTACTGCCCAACCCGCTACCGGTGGCTCCTGCACTACGGTCCAC
GCAAGGTGCTCTTTCTGTTCGCCCACCTTCTGGTCGGTCTGCTGACCGCC
TGGCTCTACACGGGCTATCTGCACACAGACTATCAACACCTGAAATATAA
GTGCTATGGCCAGGATTGCATTAGTGCTTACAATGTCTATCTATTAGGCA
TCGGTATGACCGCCGGCTGCTACTACTTTGTCTCCGTTCACATGCGCAAG
GAGATCTCCATTGAATTTCCCATTGTGGAGCAATCGCGGGCGGAGAAGAT
GCGAGAGCTGCTCTACGCCAGTTTGGCCAAATCTCTATTAAGTTCGCTGC
TGCCTACGATCAGTTACACCGCCGTATTTTGTCTTTTCGGACCCATGGTA
TGCCACAGACTTAGTCACATTCTCTCTGTGGACATGGACGAGCGACTGGA
TGGATTCTTCGGAGTTGTTACCAATGTGCGCCTGCTTTTTTTACGGCTAT
TTGCTGACCGCACAGATTTAGAGCAACATGCACCTAATGCGTTGCTTTTA
CGGCATTCTGCTCTCGGAGGATTTGCCACTGATGGTGACTAAACCGCGAG
CTGCTTTTTGCCCATTAAACAAGATATAACCTTGGTAGCCGGGTCTCGGG
AGTTTTCAATTGAGATGTAGTGCAGTGCCCTTGCTGCTCATTCATTTTCT
ACCAGCTGGCGTTGCCTAAGAACCTCCGCCACAACGGGCAGAGATTTTCC
AGCTGGACTGAGCCCGGGTAACCCGGCATCAGTTGGCGCCTCCCTCTGCG
ACCAATGCCTTGGAACCATTCTCCGGCAACTTTACCGAAGGACTTAACCG
AGTCCGATGCCAAAAATAAGATTACTCCAGGGCGCCGAGATCTGGCATGC
GAGAAATCCAATTCGTTTACACGTAGCTTGTGATGAGGCCAAAAGAGGGG
TGTACTGTCCT
FMO03239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-RA | 1978 | CG5857-RA | 144..1280 | 36..1190 | 4900 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23925002..23925662 | 436..1108 | 2475 | 94.7 | Plus |
| 3R | 32079331 | 3R | 23924542..23924941 | 36..435 | 2000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:17 has no hits.
FMO03239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:33 Download gff for
FMO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-RA | 140..1216 | 36..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:42 Download gff for
FMO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 144..1220 | 36..1128 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:26 Download gff for
FMO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 144..1220 | 36..1128 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:26 Download gff for
FMO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23924544..23924941 | 38..435 | 100 | -> | Plus |
| 3R | 23925002..23925678 | 436..1128 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:42 Download gff for
FMO03239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19750266..19750663 | 38..435 | 100 | -> | Plus |
| arm_3R | 19750724..19751400 | 436..1128 | 95 | == | Plus |
