FMO03240.5prime Sequence
823 bp (533 high quality bases) assembled on 2008-07-09
> FMO03240.5prime
TCGTATAGCATAATAAAAAGAAGTTATCAGTCGACATGATGGATAACAAT
GTACATCTTTTAGCAGGAAAGAGCCAAACTGAAACAGCCGAGTCCACAGC
AGCAGCAACAGGAACAGCAGGAGCAGGTGTAGCAGTAGTAACCGTGGCAA
GTGGAGCCGGACCAACGCCCGGCGCAAACTCCTCGACCTTTTGGAAAAAC
AGCGGACGTCGAGTGCCCGGACGACCCAGTCCCAAGCGGGAGCTCGAGAA
GGCGGCGGCAGTTGGGGTAGCGGTCGGTCGCGGCGCTGCCCCCGGATCTG
GCATGGTGTCCACCTTCACCGAGTACCAGAAGTCGGTGAGCGATGCCTGG
GACATGGGTGATTACTAGTTCTGCATCATCAGCAGCACGGAGGCGGTTGC
CGCGGCCGTTGGAGCTGGCGATGCGGCTCATTTCTCCCGGCAAGTGTCGC
AGACGGTGGCTCTCAACGTGATCGAGACGCACTCTCGAAGCAACCAGAAC
CATAATGCATCCCGGTCAGCAAACGAAAGTGGCGCAGTTTTGGTCCCAGT
CAGCAGTAGCTCGACGGACGACTGCAAGGAAGACCGTAGATCTCTGCCGG
ACAGTAATGAAAACATATCTAGATTGAGGAACTACCCGGGCAGACCGCAA
TTGCAGAATATCAGCTCGAATTGTCAGGACAGCGAGTACGAGACGAAAAA
TTGAAAAATTCCAAGTGGTGCTAGACTCGCCTCAACTGGACTTGGTGGCC
CTCAGAAGATCAGCTGGTCTGGCGTGCCTCGGAAGATGCGCGCTGTCAGC
TGGCGACTCCTTTTGGAAGTATC
FMO03240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5745-RA | 1816 | CG5745-RA | 79..865 | 36..823 | 3675 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21102277..21102661 | 36..420 | 1805 | 97.9 | Plus |
| 3R | 32079331 | 3R | 21102722..21102917 | 420..615 | 965 | 99.5 | Plus |
| 3R | 32079331 | 3R | 21103422..21103590 | 617..785 | 720 | 97.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6884 | 62..203 | 209 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2391 | 81..166 | 178 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6834 | 47..176 | 175 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2912 | 77..205 | 166 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6966 | 62..212 | 159 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6787 | 77..150 | 154 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1151 | 75..166 | 154 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6864 | 62..164 | 153 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2424 | 83..166 | 150 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6856 | 83..144 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6896 | 77..166 | 137 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1143 | 76..149 | 136 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2386 | 62..137 | 128 | 63.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3335 | 64..138 | 119 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2776..2899 | 52..176 | 118 | 59.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1152 | 62..125 | 112 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1538..1586 | 78..126 | 110 | 69.4 | Plus |
FMO03240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:59 Download gff for
FMO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5745-RA | 61..850 | 32..823 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:22 Download gff for
FMO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5745-RA | 76..865 | 32..823 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:49 Download gff for
FMO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5745-RA | 76..865 | 32..823 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:49 Download gff for
FMO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21102274..21102661 | 32..420 | 97 | -> | Plus |
| 3R | 21102723..21102918 | 421..616 | 98 | -> | Plus |
| 3R | 21103422..21103590 | 617..785 | 97 | -> | Plus |
| 3R | 21103644..21103680 | 786..823 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:22 Download gff for
FMO03240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16927996..16928383 | 32..420 | 97 | -> | Plus |
| arm_3R | 16928445..16928640 | 421..616 | 98 | -> | Plus |
| arm_3R | 16929144..16929312 | 617..785 | 97 | -> | Plus |
| arm_3R | 16929366..16929402 | 786..823 | 94 | | Plus |
